Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi11g00004 ATGTCACATTCTAGGAAACCCATTACCGAGTTAGGGCTCAGCGATCGCTTCCGTGACTCACTGAGTTGCGGCGACGACGCTAACAAGCCCGATTTCCGAGAACTCGATCTGGGTTCCCCCGTTTCGCCATTGCGGACCCGACACAACCAGAGTGCAGCAGCAGCCACCAGTAGCAGCAGCAGCTCCGGTTCGACCGGTTCGGTTTCCGGCCGAACCGGGAACAACCAGGTTGCGAAGAGATCCCATTCCGGCGAGCTATCCGGGTCCAGTGAGAACAACAGCCCCACCCGGAGTTTCAAACCGGGTCATCGGAGATCCGATTCGGGTACCTTGCAGCCGTTAATCTATTCCGGCCAAAGCCAGAGATCCCCCTCCTCCTCCTCCGTCCCCGCCTCCTCCGCCGCCGTGAATTCGCCGCCGCTGAACGTTCTTCCTGCCGGAAATATATGCCCGTCTGGCAGGGTTCTCAAGGCCGGCATGGCGGCGGCACCGAGCCGCAGCTCTCGAACCGATGTTTTGGGCTCCGGCATGGGGAATTACGGCCATGGAAGCATAATGCGGGGTGGAAGAGGTGGCTGCGTAGCCGCAGGAGAGGCAGCGAGTGCGAGGTTGAGTGATTCTGTGAAGAGGGTGGATCCAGAAGAGGTGAAGAGAGCAGGGAATGAAGAATACAAGAAGGGGCACTTTGCGGAGGCATTGAGCCTGTATGATCGGGCAATTTCGTTGTCTCCCGGCAATGCCTCCTACCGGAGCAACCGCGCGGCGGCATTGACCAGTATGGGACGGTTGGCGGAGGCGGTGAGGGAGTGTGAGGAGGCTTTGAGGTTGGATCCTAATTATGCAAGGGCACATCAGCGTTTGGCCACTCTTTTTCTTAGGTTGGGATATGTTGAGGATGCTAGGAAACACCTATGTTATGGCGGGCTTCGGCCGGATCCTTCAGAGTTGCAGAAGTTGCAGATAGTGGAAAAGCATATTAGGAAATGTGTAGATGTGAGGAGAATAGGAGATTGGAAAAGTGTTCTGAGGGAAGTTGATGCTGCTGGTGCTGCTGGTGCAGACTCTTGTGTTGGGCTATTTATGTGTAGAGCAGAGGCACTTCTGAAGCTCCATCAAATTGATGATGCCGAATCAAGTTTATTGCATATACCCAAATGCGAAGCGAATACCATTTCCTCATCACAGGCAAGATTCTTTGGGATGCTCTCCGAAGCTTATTGCTACTTAGTTAGAGCTCAGATTGAGATTGCTTTAGGAAGGTTTGAGAATGCAGTTACTGCTGCTGAGAAAGCAAGTCAGATTGATCCCCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTAAGGATGGTGGCAAGAGCTCGAGCACGTGGGAATGATCTTTTTAAGTCAGAAAGGTTCACTGAGGCATGCTCAGCATATGGTGAAGGTTTGAGGCTTGACCCTTCAAACTCTATTCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGTTCCATTGAAGACTCCAATCAAGCTTTACATATCCAACCAAATTACACAAAAGCCATTCTTCGAAGGGCTGCCTCATATAGCAAGTTAGAAAGGTGGGAAGAAGCAGTAAAAGATTACGAGCTCTTGCGTAGAGAACTACCGGATAACAATGAAGTTGCTGAGGCTTTGTTTCACGCACAAGTTGCATTAAAGAAATCTCGTGGGGAAGAAGTGCATAATTTAAAATTTGGTGGTGAAGTGGAGAACATATCAGGCCTTGAGCAGTTTAGAGCTGCAATTTCTTTACCAGGTGTTTCGGTTGTCCATTTTCAAGTCGCATCCAACTTGCATTGCAAGCAAATATCACCATTTGTGGATACACTATGTGGTCGCTACCCATCTATTAACTTCCTCAAGGTGGATATTCAAGAAAGCCCAACAGTTGCTACTGCTGAGAATGTTAGGATTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGCGTGAAGGAAATCGTATGCCCTAGTCGTGAAATGTTGGAACACTCTGTTAGGCATTACAACTTGTAG 2058 0.4971 MSHSRKPITELGLSDRFRDSLSCGDDANKPDFRELDLGSPVSPLRTRHNQSAAAATSSSSSSGSTGSVSGRTGNNQVAKRSHSGELSGSSENNSPTRSFKPGHRRSDSGTLQPLIYSGQSQRSPSSSSVPASSAAVNSPPLNVLPAGNICPSGRVLKAGMAAAPSRSSRTDVLGSGMGNYGHGSIMRGGRGGCVAAGEAASARLSDSVKRVDPEEVKRAGNEEYKKGHFAEALSLYDRAISLSPGNASYRSNRAAALTSMGRLAEAVRECEEALRLDPNYARAHQRLATLFLRLGYVEDARKHLCYGGLRPDPSELQKLQIVEKHIRKCVDVRRIGDWKSVLREVDAAGAAGADSCVGLFMCRAEALLKLHQIDDAESSLLHIPKCEANTISSSQARFFGMLSEAYCYLVRAQIEIALGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARARGNDLFKSERFTEACSAYGEGLRLDPSNSILYCNRAACWFKLGQWESSIEDSNQALHIQPNYTKAILRRAASYSKLERWEEAVKDYELLRRELPDNNEVAEALFHAQVALKKSRGEEVHNLKFGGEVENISGLEQFRAAISLPGVSVVHFQVASNLHCKQISPFVDTLCGRYPSINFLKVDIQESPTVATAENVRIVPTFKIYKNGSRVKEIVCPSREMLEHSVRHYNL 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi11g00004 685 MobiDBLite consensus disorder prediction 110 139 - -
Gabi11g00004 685 MobiDBLite consensus disorder prediction 1 143 - -
Gabi11g00004 685 Pfam TPR repeat 220 261 - -
Gabi11g00004 685 ProSiteProfiles TPR repeat profile. 213 246 IPR019734 GO:0005515
Gabi11g00004 685 SUPERFAMILY Thioredoxin-like 488 683 IPR036249 -
Gabi11g00004 685 Pfam Thioredoxin 591 675 IPR013766 -
Gabi11g00004 685 FunFam TPR repeat-containing thioredoxin TTL4 577 684 - -
Gabi11g00004 685 SUPERFAMILY TPR-like 213 441 IPR011990 GO:0005515
Gabi11g00004 685 ProSiteProfiles TPR repeat profile. 405 438 IPR019734 GO:0005515
Gabi11g00004 685 MobiDBLite consensus disorder prediction 43 97 - -
Gabi11g00004 685 SMART tpr_5 247 280 IPR019734 GO:0005515
Gabi11g00004 685 SMART tpr_5 405 438 IPR019734 GO:0005515
Gabi11g00004 685 SMART tpr_5 451 484 IPR019734 GO:0005515
Gabi11g00004 685 SMART tpr_5 213 246 IPR019734 GO:0005515
Gabi11g00004 685 SMART tpr_5 519 552 IPR019734 GO:0005515
Gabi11g00004 685 SMART tpr_5 485 518 IPR019734 GO:0005515
Gabi11g00004 685 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Gabi11g00004 685 CDD TRX_family 590 674 - -
Gabi11g00004 685 Pfam Tetratricopeptide repeat 407 438 IPR019734 GO:0005515
Gabi11g00004 685 MobiDBLite consensus disorder prediction 1 33 - -
Gabi11g00004 685 Gene3D Tetratricopeptide repeat domain 211 571 IPR011990 GO:0005515
Gabi11g00004 685 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 24 682 IPR044534 -
Gabi11g00004 685 Pfam Tetratricopeptide repeat 456 516 - -
Gabi11g00004 685 ProSiteProfiles TPR repeat profile. 247 280 IPR019734 GO:0005515
Gabi11g00004 685 Gene3D Glutaredoxin 577 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi11g00004 Gabi-Chr11 71602 74972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi11g00004 450 595 U-box Gene Family AT3G07370 30.055 6.05e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi11g00004 - - gmx:100805790 1013.45