Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1196g00014 ATGAAGGACGGTTGGTTTTTCGACAAGAATTTTAATGGTTTATCGGATGAGAATTTTGATGAAGTCATCAAGCTTTTGGATTTCACACTTGAAGATGTGGAAACTGATGATGCTGAAGAAGATTGGGATGCTCAATTTAAGCAACTTGAAGAGCCATCTCTTGGTGCTTTTCCAGTATCATCATCTGGGCTTTGTGATAAAACTCAGAAAAATGAGAATCCAAAACTTGAGAGGAGTTTCTCTGCACCGCTAGCAAAGACTACCGGACCTACATATGGCAAAACTATTCCCATTCAGAATGTCTCGAGAGGAAAAGATTTGCGCAAACTCCTAACCAACAGCCCAGTTTCTGTTTTTGAAAACAGTAGTTCTTCCTCGGTTGAGAATTCCAACTTTGAGTTACCTGTCATCCCAGTAAAGCGTCCTCGAGGCAGACGTCAGCGTCTCTCAAGCTTCAGCCTGCTATTCTCAATTCCTTTCTTCCCTGCTTCACCAGCTGTTAAAAAAGATCAAAGGGGAGCTGTCTATGAATCAGATTTAGAAACACATCATGCTCGGAAATTATTAAGCAGAGTCACAAAGAAGCAAAGGGAAAAGGATCTCTCCATGCTCTCTTATAATATTGAGATGAAGAGATCTTCATCACAGGAGCCATTTACCCCCAAAAAATGCATGCATTGTGAGGTTACAAAGACACCACAATGGAGGGAGGGACCTATGGGTCCTAAGACCCTATGTAATGCTTGTGGGGTTCGATACAGGACCGGCCGGCTCTTTCCTGAATATCGGCCTGCTGCTAGCCCCACTTTTGTAGCATCATTACACTCAAACTCTCACAAGAAGGTCATAGAAATGAGGAAGAGAGCCACACAGGAGACTAATACTCTAAATTCTCTAGGATAA 903 0.4252 MKDGWFFDKNFNGLSDENFDEVIKLLDFTLEDVETDDAEEDWDAQFKQLEEPSLGAFPVSSSGLCDKTQKNENPKLERSFSAPLAKTTGPTYGKTIPIQNVSRGKDLRKLLTNSPVSVFENSSSSSVENSNFELPVIPVKRPRGRRQRLSSFSLLFSIPFFPASPAVKKDQRGAVYESDLETHHARKLLSRVTKKQREKDLSMLSYNIEMKRSSSQEPFTPKKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRTGRLFPEYRPAASPTFVASLHSNSHKKVIEMRKRATQETNTLNSLG 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1196g00014 300 Pfam GATA zinc finger 224 257 IPR000679 GO:0006355|GO:0043565
Gabi1196g00014 300 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
Gabi1196g00014 300 SMART GATA_3 218 268 IPR000679 GO:0006355|GO:0043565
Gabi1196g00014 300 ProSiteProfiles GATA-type zinc finger domain profile. 218 254 IPR000679 GO:0006355|GO:0043565
Gabi1196g00014 300 CDD ZnF_GATA 223 270 IPR000679 GO:0006355|GO:0043565
Gabi1196g00014 300 FunFam GATA transcription factor 213 298 - -
Gabi1196g00014 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 281 - -
Gabi1196g00014 300 Gene3D - 214 295 IPR013088 GO:0006355|GO:0008270
Gabi1196g00014 300 PANTHER GATA TRANSCRIPTION FACTOR 34 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1196g00014 Gabi-Chr1196 163426 167542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1196g00014 8 292 C2C2-Gata Transcription Factor Family AT1G08010 37.457 7.96e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi1196g00014 GATA 1.7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1196g00014 - - gmx:100813303 348.977