Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1196g00013 ATGAAGGAAGTTGAGAAGAGCTTGGATCCTCAACTATGGCACGCGTGTGCAGGGAGCATGGTTCAGATGCCTCAGGTGAACTCGAAAGTGTTCTACTTTCCACAAGGGCACGCGGAGCATGCTCACACAAACGTTGATCTGAGGATTCCGCCATTGATCCTTTGCAGGGTTGCGGCGGTGAAATTCATGGCGGACCCAGAAACCGATGAAGTGTTCGCGAGGTTAAGGCTTGTTCCTCTGAGTAATTCAGAGCTTGGTTACGATGAAGATGTTGGTGATGCGTTGGAGAGTTCAGAAAAGCCTGCATCTTTTGCAAAGACTTTGACCCAATCGGATGCTAACAATGGTGGGGGGTTCTCGGTTCCTAGGTACTGCGCCGAGACCATCTTTCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTTCAGACGGTGGTTGCCAAGGACGTTCACGGCGAGCTTTGGAAGTTCAGGCATATATACAGAGGCACGCCACGTCGGCACTTGCTGACCACCGGGTGGAGCACTTTCGTGAACCAGAAGAAGCTGGTTGCTGGGGATTCTGTGGTGTTTCTGAGGGCTGAGAATGGTGACCTATGTGTTGGGATTCGACGAGCAAAGAAGGGAATTGGAGGTGGTGGTGGTGGTTCTGACGCCTCATGTGGGTGGAGCTCAGCTTCAGGTTCAGGCCCTGGGAATTGTGGTATTGGACCTTATGGGACAATCTCTTTTTTCTTGAGAGAGGAGAATAAGCTATTGCGGGATCGTTGTGTTGGTGTTGGTGTTGGTGGTGGTGTTAGTTTGAGTGGAAGAGCAAGAGTGAGGCCTGAAGCTGTTGTGGAAGCTGTGACACTTGCTGCTAGCAACCAACCATTTGAAGTTGTTTATTACCCAAGAGCCAGTACTCCTGAGTTTTGCATCAAGGCTTCAGCTGTGAGGGCTGCTATGAGAATTCAATGGTGCTCTGGGATGAGGTTCAAGATGGCCTTTGAAACCGAGGACTCTTCCAGGATAAGTTGGTTCATGGGAACTGTTGCTTCTGTTCAGGTTGTAGATCCTATCCGATGGCCTAATTCCCCCTGGAGGCTACTTCAGGTTACTTGGGATGAGCCGGATTTACTACAAAATGTGAAGCGTGTTAGCCCATGGTTGGTTGAATTGGTATCAAACATGCCAGTCACCCATTTAACATCCTTCTCTCCACCAAGGAAGAAGCTGCGGTTTCCGCAATACCCAGATTTCCCCCTTGATGTTCAATTTCCATTACCAACATTTTCAGGCAACCAGCTTGGGCCTTACAACCCCTTGTGTGGTTTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTATCAGATCTCCACTTTAACAATAAACTTCAGTTGGGGTTGCTTCCAACCAATATCCAGCAGCTTGATGTGCATAGTGGGATTTCGGATGGTCACAACACGACCAACCACGATAAGAGCAAAGAAAGTTTATCGTGCTTGCTGACCATGGGAAAATCTAATAATAGTTTGGAGAAATCTGATGATGTAAAGAAACACCAGTTTTTGCTTTTTGGACAACCAATACTCACTGAGCAACAAATTTCTAGAGGCTGTTCTAGAGATGTGTTGTCTCATAACTATACCGGAAAAAACTCACTAGATGAGAATAAAGTCAAAGAAAAGTGCTTTTTTGGTGACTCACCAGAAAAAGCTTCTTCTGCTGAGTTTTCTTGGCAACTTGGCTTGGATACTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTAGGGCGTACCTTAGACCTATCAAATCTTGATTCTTATGAAGAGTTGTATAGGAGACTTGCCAACATGTTTGGCATAGAAAGATCTGAGATTTTGAATCATGTTCTCTACCGTGATGCAACAGGTGCTGTTAAGCAAACTGGAGAAGAACCCTTCAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAAATATTAGAAGGGCCTGGATTACAGGAACTCGGAATGGTGAACATGGATTGGATGCATCAAATAAAACAGGTCCTCTGAGCATATTTGCTTAA 2103 0.4646 MKEVEKSLDPQLWHACAGSMVQMPQVNSKVFYFPQGHAEHAHTNVDLRIPPLILCRVAAVKFMADPETDEVFARLRLVPLSNSELGYDEDVGDALESSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKKGIGGGGGGSDASCGWSSASGSGPGNCGIGPYGTISFFLREENKLLRDRCVGVGVGGGVSLSGRARVRPEAVVEAVTLAASNQPFEVVYYPRASTPEFCIKASAVRAAMRIQWCSGMRFKMAFETEDSSRISWFMGTVASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVTHLTSFSPPRKKLRFPQYPDFPLDVQFPLPTFSGNQLGPYNPLCGLSDNAPAGIQGARHAQIGISLSDLHFNNKLQLGLLPTNIQQLDVHSGISDGHNTTNHDKSKESLSCLLTMGKSNNSLEKSDDVKKHQFLLFGQPILTEQQISRGCSRDVLSHNYTGKNSLDENKVKEKCFFGDSPEKASSAEFSWQLGLDTGHCKVFLESEDVGRTLDLSNLDSYEELYRRLANMFGIERSEILNHVLYRDATGAVKQTGEEPFSEFMKTAKRLTILTDSGSKNIRRAWITGTRNGEHGLDASNKTGPLSIFA 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1196g00013 700 ProSiteProfiles PB1 domain profile. 588 668 IPR000270 GO:0005515
Gabi1196g00013 700 SUPERFAMILY DNA-binding pseudobarrel domain 97 205 IPR015300 -
Gabi1196g00013 700 Pfam B3 DNA binding domain 104 205 IPR003340 GO:0003677
Gabi1196g00013 700 FunFam Auxin response factor 102 206 - -
Gabi1196g00013 700 SMART B3_2 104 206 IPR003340 GO:0003677
Gabi1196g00013 700 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi1196g00013 700 CDD B3_DNA 103 204 IPR003340 GO:0003677
Gabi1196g00013 700 Gene3D - 587 673 - -
Gabi1196g00013 700 Gene3D - 319 392 - -
Gabi1196g00013 700 Gene3D - 102 206 IPR015300 -
Gabi1196g00013 700 ProSiteProfiles B3 DNA-binding domain profile. 104 206 IPR003340 GO:0003677
Gabi1196g00013 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 668 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi1196g00013 700 FunFam Auxin response factor 319 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1196g00013 Gabi-Chr1196 133734 137381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1196g00013 4 672 B3 DNA Binding Superfamily AT4G30080 59.680 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi1196g00013 B3 1.4e-21 CL0405