Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1196g00012 ATGAAGGAAGTTGAGAAGAGCTTGGATCCTCAACTATGGCACGCGTGTGCAGGGAGCATGGTTCAGATGCCTCAGGTGAACTCGAAAGTGTTCTACTTTCCACAAGGGCACGCGGAGCATGCTCACACAAACGTTGATCTGAGGATTCCGCCATTGATCCTTTGCAGGGTTGCGGCGGTGAAATTCATGGCGGACCCAGAAACCGATGAAGTGTTCGCGAGGTTAAGGCTTGTTCCTCTGAGTAATTCAGAGCTTGGTTACGATGAAGATGTTGGTGATGCGTTGGAGAGTTCAGAAAAGCCTGCATCTTTTGCAAAGACTTTGACCCAATCGGATGCTAACAATGGTGGGGGGTTCTCGGTTCCTAGGTACTGCGCCGAGACCATCTTTCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTTCAGACGGTGGTTGCCAAGGACGTTCACGGCGAGCTTTGGAAGTTCAGGCATATATACAGAGGCACGCCACGTCGGCACTTGCTGACCACCGGGTGGAGCACTTTCGTGAACCAGAAGAAGCTGGTTGCTGGGGATTCTGTGGTGTTTCTGAGGGCTGAGAATGGTGACCTATGTGTTGGGATTCGACGAGCAAAGAAGGGAATTGGAGGTGGTGGTGGTGGTTCTGACGCCTCATGTGGGTGGAGCTCAGCTTCAGGTTCAGGCCCTGGGAATTGTGGTATTGGACCTTATGGGACAATCTCTTTTTTCTTGAGAGAGGAGAATAAGCTATTGCGGGATCGTTGTGTTGGTGTTGGTGTTGGTGGTGGTGTTAGTTTGAGTGGAAGAGCAAGAGTGAGGCCTGAAGCTGTTGTGGAAGCTGTGACACTTGCTGCTAGCAACCAACCATTTGAAGTTGTTTATTACCCAAGAGCCAGTACTCCTGAGTTTTGCATCAAGGCTTCAGCTGTGAGGGCTGCTATGAGAATTCAATGGTGCTCTGGGATGAGGTTCAAGATGGCCTTTGAAACCGAGGACTCTTCCAGGATAAGTTGGTTCATGGGAACTGTTGCTTCTGTTCAGGTTGTAGATCCTATCCGATGGCCTAATTCCCCCTGGAGGCTACTTCAGGTTACTTGGGATGAGCCGGATTTACTACAAAATGTGAAGCGTGTTAGCCCATGGTTGGTTGAATTGGTATCAAACATGCCAGTCACCCATTTAACATCCTTCTCTCCACCAAGGAAGAAGCTGCGGTTTCCGCAATACCCAGATTTCCCCCTTGATGTTCAATTTCCATTACCAACATTTTCAGGCAACCAGCTTGGGCCTTACAACCCCTTGTGTGGTTTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTATCAGATCTCCACTTTAACAATAAACTTCAGTTGGGGTTGCTTCCAACCAATATCCAGCAGCTTGATGTGCATAGTGGGATTTCGGATGGTCACAACACGACCAACCACGATAAGAGCAAAGAAAGTTTATCGTGCTTGCTGACCATGGGAAAATCTAATAATAGTTTGGAGAAATCTGATGATGTAAAGAAACACCAGTTTTTGCTTTTTGGACAACCAATACTCACTGAGCAACAAATTTCTAGAGGCTGTTCTAGAGATGTGTTGTCTCATAACTATACCGGAAAAAACTCACTAGATGAGAATAAATTTTCTTGGCAACTTGGCTTGGATACTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTAGGGCGTACCTTAGACCTATCAAATCTTGATTCTTATGAAGAGTTGTATAGGAGACTTGCCAACATGTTTGGCATAGAAAGATCTGAGATTTTGAATCATGTTCTCTACCGTGATGCAACAGGTGCTGTTAAGCAAACTGGAGAAGAACCCTTCAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAAATATTAGAAGGGCCTGGATTACAGGAACTCGGAATGGTGAACATGGATTGGATGCATCAAATAAAACAGGTCCTCTGAGCATATTTGCTTAA 2049 0.4661 MKEVEKSLDPQLWHACAGSMVQMPQVNSKVFYFPQGHAEHAHTNVDLRIPPLILCRVAAVKFMADPETDEVFARLRLVPLSNSELGYDEDVGDALESSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKKGIGGGGGGSDASCGWSSASGSGPGNCGIGPYGTISFFLREENKLLRDRCVGVGVGGGVSLSGRARVRPEAVVEAVTLAASNQPFEVVYYPRASTPEFCIKASAVRAAMRIQWCSGMRFKMAFETEDSSRISWFMGTVASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVTHLTSFSPPRKKLRFPQYPDFPLDVQFPLPTFSGNQLGPYNPLCGLSDNAPAGIQGARHAQIGISLSDLHFNNKLQLGLLPTNIQQLDVHSGISDGHNTTNHDKSKESLSCLLTMGKSNNSLEKSDDVKKHQFLLFGQPILTEQQISRGCSRDVLSHNYTGKNSLDENKFSWQLGLDTGHCKVFLESEDVGRTLDLSNLDSYEELYRRLANMFGIERSEILNHVLYRDATGAVKQTGEEPFSEFMKTAKRLTILTDSGSKNIRRAWITGTRNGEHGLDASNKTGPLSIFA 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1196g00012 682 Pfam B3 DNA binding domain 104 205 IPR003340 GO:0003677
Gabi1196g00012 682 SUPERFAMILY DNA-binding pseudobarrel domain 97 205 IPR015300 -
Gabi1196g00012 682 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 650 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi1196g00012 682 FunFam Auxin response factor 319 392 - -
Gabi1196g00012 682 Gene3D - 569 655 - -
Gabi1196g00012 682 Gene3D - 102 206 IPR015300 -
Gabi1196g00012 682 SMART B3_2 104 206 IPR003340 GO:0003677
Gabi1196g00012 682 CDD B3_DNA 103 204 IPR003340 GO:0003677
Gabi1196g00012 682 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi1196g00012 682 Gene3D - 319 392 - -
Gabi1196g00012 682 ProSiteProfiles PB1 domain profile. 570 650 IPR000270 GO:0005515
Gabi1196g00012 682 FunFam Auxin response factor 102 206 - -
Gabi1196g00012 682 ProSiteProfiles B3 DNA-binding domain profile. 104 206 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1196g00012 Gabi-Chr1196 133734 137382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1196g00012 4 654 B3 DNA Binding Superfamily AT4G30080 59.389 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi1196g00012 B3 1.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1196g00012 - - gmx:100814686 1087.79