Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1196g00003 ATGGCCATGGCTTTGGCTCAACATAGAGAAAGCAGCAGCAGTGGTAGCATTGATAAGCACCTTGATGCTTCTGGGAAATATGTGAGGTACACTGCTGAACAGGTTGAGGCTTTGGAACGTGTTTATGCTGAGTGCCCCAAGCCTAGTTCCCTGAGAAGGCAACAATTGATCCGAGAGTGCCCCATTCTTTCCAACATCGAGCCCAAGCAGATCAAGGTTTGGTTCCAGAATCGCAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCACGACTTCAAACTGTGAACCGTAAACTGTCAGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAACAGGTGTCACAGCTTGTGTGCGAGAATGGGTATATGCGGCAGCAATTGCATACTGTGAGTACATCAGCAGCAACTACTGATGCTAGTTGTGATTCGGTGGTTACTACTCCTCAGCATTCCATGAGAGATGCTAATAACCCTGCTGGACTCCTATCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCCCAAACTTGCAATGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTGGTTTAGAACCTACAAAGATTGCAGAGATCCTCAAAGATCGTCCATCTTGGTTTCGGGACTGTCGGAACCTAGAAGTTTTCACAATGTTTCCTGCCGGAAATGGTGGGACCATTGAACTTGTTTACACACAGACATATGCTCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACTCTGAGATACACTACAAGTTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCCCTGTCTGGTTCTGGGACGGGCCCTGATCCAGCTGCTGCTGCTCAGTTTGTTAGGGCTGAGACGCTCCCTAGTGGCTACTTGATTCGCCCATGTGAGGGTGGAGGGTCAATCATCCACATCGTAGACCACCTAAATCTTGAGGCATGGAGTGTGCCAGAAGTGCTGCGACCACTTTATGAATCATCAAAGATGATTGCTCAGAAAATGACAATTGCTGCTCTTCGCTATATCAGGCAAATAGCTCAGGAAACAAGTGGTGAAGTGGTATATGGATTGGGTAGGCAGCCTGCTGTTCTGCGAACTTTCAGCCAAAGATTGAGCAGAGGCTTCAATGATGCCGTAAATGGATTCAACGACGACGGGTGGACTGTACTGAACTGTGATGGCGCCGAGGATGTAATTATTGCAGTTAGTTCAACCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTACTTTCCTTGGAGGAATTCTCTGTGCCAAAGCTTCTATGTTGCTCCAAAATGTCCCCCCTGCAGTTTTGGTTCGCTTTCTGAGGGAGCACCGGTCAGAGTGGGCTGATTTCAATGTTGATGCTTATTCTGCTGCATCACTGAAAGCTGGCACCTATGCCTATCCAGGGATGAGGCCTACAAGATTCACTGGCAGTCAAATAATTATGCCTCTCGGCCATACAATTGAACATGAAGAAATGCTTGAAGTTATTCGGCTTGAAGGCCACTCTCTTGCTCAAGAAGACGCATTTGTTTCTAGGGACATTCATCTCTTACAGATATGTAGTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCTGAACTCATATTTGCTCCAATTGATGAAATGTTCCCTGATGATGCTCCATTGGTGCCTTCTGGTTTCCGCATCATTCCATTGGATTCAAAACCAGATGCAATGACTACAAATCGAACACTGGATTTGACATCTGGTCTTGAAGTGGGTCCAGCGACAACTAGCGGTGCAGATGCATCATCTAGTCACAACACGCGATCCGTGTTGACAATTGCCTTCCAGTTTCCTTTTGACAGCAGTTTGCAAGATAATGTTGCAATCATGGCGCGTCAATATGTCAGGACTGTGATTTCCTCTGTGCAAAGGGTTGCCATGGCTATATCTCCATCCGGTATAAACCCAGCTGTTGGAGCAAAACTTTCTCCAGGTTCTCCAGAAGCTGCTACACTAGCTCACTGGATCTGCCAAAGTTATAGTTACTATTTAGGGACAGACTTATTGAGATCAGATTCTCTTGTTGGTGACTTGATGCTGAAACATCTGTGGCATCATCAGGATGCCATTCTATGCTGTTCACTGAAGTCTCTACCAGTGTTCATCTTTGCAAATCAAGCTGGCCTAGACATGTTGGAAACAACTCTAGTGGCTTTACAAGACATCACATTGGATAAAATATTTGATGAGTCCGGACGCAAGGCATTGGTTGCAGACTTTGCCAAGTTAATGCAACAGGGTTTTGCTTATCTGCCAGCTGGGATCTGCATGTCCACGATGGGGAGGCATGTTTCATATGAGCAAGCCATTGCATGGAAAGTGCTTACCACAGAAGATAACACTGTTCACTGCGTAGCTTTCTCTTTCATAAATTGGTCTTTTGTATGA 2526 0.4656 MAMALAQHRESSSSGSIDKHLDASGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVCENGYMRQQLHTVSTSAATTDASCDSVVTTPQHSMRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQTCNGVAARACGLVGLEPTKIAEILKDRPSWFRDCRNLEVFTMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTSLDNGSLVVCERSLSGSGTGPDPAAAAQFVRAETLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKMIAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWTVLNCDGAEDVIIAVSSTKNLSGTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPDAMTTNRTLDLTSGLEVGPATTSGADASSSHNTRSVLTIAFQFPFDSSLQDNVAIMARQYVRTVISSVQRVAMAISPSGINPAVGAKLSPGSPEAATLAHWICQSYSYYLGTDLLRSDSLVGDLMLKHLWHHQDAILCCSLKSLPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALVADFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLTTEDNTVHCVAFSFINWSFV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1196g00003 841 Coils Coil 91 122 - -
Gabi1196g00003 841 SMART HOX_1 23 89 IPR001356 GO:0003677
Gabi1196g00003 841 SMART START_1 166 376 IPR002913 GO:0008289
Gabi1196g00003 841 SUPERFAMILY Homeodomain-like 22 88 IPR009057 -
Gabi1196g00003 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 23 841 IPR044830 GO:0003700
Gabi1196g00003 841 CDD homeodomain 26 86 IPR001356 GO:0003677
Gabi1196g00003 841 Gene3D - 19 92 - -
Gabi1196g00003 841 Pfam Homeodomain 26 84 IPR001356 GO:0003677
Gabi1196g00003 841 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
Gabi1196g00003 841 Pfam MEKHLA domain 697 840 IPR013978 -
Gabi1196g00003 841 CDD bZIP 78 117 - -
Gabi1196g00003 841 FunFam Homeobox-leucine zipper protein REVOLUTA 26 81 - -
Gabi1196g00003 841 Gene3D - 202 383 IPR023393 -
Gabi1196g00003 841 Pfam START domain 167 374 IPR002913 GO:0008289
Gabi1196g00003 841 SUPERFAMILY Bet v1-like 166 378 - -
Gabi1196g00003 841 ProSiteProfiles 'Homeobox' domain profile. 21 85 IPR001356 GO:0003677
Gabi1196g00003 841 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1196g00003 Gabi-Chr1196 41976 49003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1196g00003 1 841 Homeobox Transcription Factor Family AT5G60690 82.021 0.0 1448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi1196g00003 START 4e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1196g00003 K09338 - gmx:100804870 1590.47