Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1195g00002 ATGGAGAAGTACCTGAAGGATTTCGAATTGGAGTCTAAGAATTGTTCGATCGAAGCTTTGAGTAGATGGAGATCTGCAGTATCGTTGGTGAAGAACCCTAGGAGAAGGTTCCGCAATGTCGCAGATCTCGTCAAACGCATCCAAGTTCAAGAGAAGCATCGCGAATTACAGGGAAAGATTCGAGCTGTTATCTTCGCTCAAAAGGCAGCACAGAAATTTACGGATGTTCTTGGTACAGCTGAATACAAGCTCTCAGAAAAGACGAGAAAAGCTGGCTTTGGTATTGAACCAGATGATATTGCATCAATTGTTCGAGGCCATGACTACAAGAACTTCAGAAAAATTGGGGAAGTTGAAGGGATTAGAAGTAAACTCTCAGTCTCAGTCGATGAAGGTGTCAGTCAAGACAGCATACATATCAGGCAACAGATATATGGAGTCAACCGTTATACTGAGAAACCTTCTAAAAGCTTCCTGATGTTTGTTTGGGAAGCTCTGCATGACATAACACTAATCATTCTCATTGTTTGTGCTATAGTTTCTATAGGTATAGGGCTTGCCACTGAAGGATGGCCAAAGGGTGTTTATGACGGTCTGGGAATCATACTTAGTGTATTCTTGGTTGTCATTGTTACTGCTATCAGTGACTACCAGCAATCCCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATCTTTGTTCATGTCACCAGGGACGGGAAAAGACAGAAGATCTCAATTTATGACTTGATAGTGGGGGATATTGTTCATTTGTCAACTGGTGATCAAGTTCCAGCTGATGGGATTTATATATCAGGATATTCATTGCTAATTGATGAATCAAGTCTTTCAGGTGAGAGCGAACCAGTAAATATAGATGATCAAAGACCTTTTCTTCTTTCAGGAACCAAAGTGCAAGATGGTCAGGGGAAGATGATAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAGTTGATGGAAACTCTAAGTGAAGGGGGAGAGGATGAGACTCCACTGCAGGTGAAATTGAATGGAGTTGCCACAGTTATTGGTAAAATTGGTTTGACTTTTGCTGTGCTGACATTTGTGGTGTTGATAGTAAGGTTTCTGGTTGAAAAAGCAGTTCATGGTGAGTTTGCTAGTTGGTCTTCAAATGATGCAATGAAGCTGCTAGACTACTTTTCTATTGCTGTAACCATAATAGTTGTTGCGATTCCCGAAGGATTACCATTAGCTGTCACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAAGGCACTTGTGAGACATCTTTCTGCGTGTGAGACTATGGGTTCGGCTAGTTGCATTTGCACAGATAAGACGGGGACATTGACCACTAACCATATGGTGGTTAATAAAATTTGGATATGCGAAAAGACCATGGAAATTAAAGGTAATGAGAGTGTAGACAAACTGAAAACAGAGATATCTGAAGAAGTTCTAAGTATCCTTTTGCAGGCTATATTTCAAAATACTTCTTCCGAAGTAGTTAAGGACAAAGATGGAAAGAACACAATATTGGGAACACCAACAGAATCAGCACTAATGGAATTTGGCTTGCTATCAGGTGGTGATTTTGATGCCCAGCATAGAGCCTATAAGATACTTAAGGTTGAGCCTTTTAATTCAGTACGGAAGAAGATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGGGTCCGAGCTTTCTGCAAAGGTGCTTCAGAAATAGTATTAAAAATTTGTGACAAAATTATTGATAGTAATGGAACAGCTGTTGATCTTCCTGAAGAGCAGGCGAAGAATGTCTCAGACGTTATCAATGGCTTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTGGCTGTCAAAGATATAAATGAAACCCAAGGAGAAACCATCATCCCTGATAGTGGCTATACTCTGATAGCCATTGTGGGAATCAAGGATCCTGTGCGCCCTGGGGTTAAGGAAGCTGTCGAAACTTGTTTAGCAGCTGGAATAACTGTCCGCATGGTCACTGGTGATAACATAAATACAGCCAAGGCTATAGCTAAAGAATGTGGCATACTTACTGAGGATGGTGTAGCCATAGAAGGACCAGAATTTCGTGACTTGCCTTTAGAGCAAATGAAGGATATCGTACCAAGAATTCAGGTAATGGCACGATCCTTACCTCTTGACAAGCATACCTTGGTAACCCATCTGAGGAATATGTTTGATGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGGCAGACATCGGGCTAGCCATGGGCATAGCTGGAACCGAGGTTGCTAAAGAAAATGCTGATGTCATCATAATGGATGATAATTTCGCTACTATTGTCAACGTGGCCAAATGGGGACGGGCTATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATGTCGTTGCTCTGGTTATTAACTTCGTTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTGGCCCTGGCTACTGAACCTCCTAATGATGGACTTATGAAAAGACCCCCAGTTGGAAGGAGAGCAAGTTTTATAACCAAACCCATGTGGAGGAATATCTTTGGTCAAAGTTTATATCAACTAATTGTCCTTGCGGTTCTCAATTTTGACGGGAAGAGGCTATTAGGAATTAGTGGTTCAGATGCAACTATAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTGTTCAATGAGATAAACAGCAGAGAAATTGAAAAGATAAACATATTCAGAGGCATGTTCAACAGCAAGATATTTTTTATGGTAATTTTCTCCACAGTGGCATTTCAAGTGATCATAGTTGAGTTCCTGGGAACATTTGCCAGCACGGTGCCTCTAAACTGGCAACTCTGGTTACTCAGCGTTTTACTTGGAGCAGTTAGCATGCCTATAGCTGTTATCCTCAAGTGCATCCCAGTTGAAAGAGATACTACAAAGCACCATGATGGTTATGAGGTACTGCCTTCTGGTCCCGAGCAGGCATAA 3099 0.4153 MEKYLKDFELESKNCSIEALSRWRSAVSLVKNPRRRFRNVADLVKRIQVQEKHRELQGKIRAVIFAQKAAQKFTDVLGTAEYKLSEKTRKAGFGIEPDDIASIVRGHDYKNFRKIGEVEGIRSKLSVSVDEGVSQDSIHIRQQIYGVNRYTEKPSKSFLMFVWEALHDITLIILIVCAIVSIGIGLATEGWPKGVYDGLGIILSVFLVVIVTAISDYQQSLQFRDLDKEKKKIFVHVTRDGKRQKISIYDLIVGDIVHLSTGDQVPADGIYISGYSLLIDESSLSGESEPVNIDDQRPFLLSGTKVQDGQGKMIVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLTFAVLTFVVLIVRFLVEKAVHGEFASWSSNDAMKLLDYFSIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWICEKTMEIKGNESVDKLKTEISEEVLSILLQAIFQNTSSEVVKDKDGKNTILGTPTESALMEFGLLSGGDFDAQHRAYKILKVEPFNSVRKKMSVLVGLPDGGVRAFCKGASEIVLKICDKIIDSNGTAVDLPEEQAKNVSDVINGFASEALRTLCLAVKDINETQGETIIPDSGYTLIAIVGIKDPVRPGVKEAVETCLAAGITVRMVTGDNINTAKAIAKECGILTEDGVAIEGPEFRDLPLEQMKDIVPRIQVMARSLPLDKHTLVTHLRNMFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFATIVNVAKWGRAIYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMKRPPVGRRASFITKPMWRNIFGQSLYQLIVLAVLNFDGKRLLGISGSDATIVLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFNSKIFFMVIFSTVAFQVIIVEFLGTFASTVPLNWQLWLLSVLLGAVSMPIAVILKCIPVERDTTKHHDGYEVLPSGPEQA 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1195g00002 1032 PRINTS H+-transporting ATPase (proton pump) signature 782 807 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1195g00002 1032 PRINTS H+-transporting ATPase (proton pump) signature 750 766 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1195g00002 1032 PRINTS H+-transporting ATPase (proton pump) signature 607 625 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1195g00002 1032 FunFam Calcium-transporting ATPase 459 654 - -
Gabi1195g00002 1032 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 455 659 IPR023299 GO:0000166
Gabi1195g00002 1032 FunFam Calcium-transporting ATPase 767 1013 - -
Gabi1195g00002 1032 Pfam Cation transport ATPase (P-type) 505 589 - -
Gabi1195g00002 1032 Pfam Cation transporter/ATPase, N-terminus 116 181 IPR004014 -
Gabi1195g00002 1032 Pfam E1-E2 ATPase 234 427 - -
Gabi1195g00002 1032 FunFam Calcium-transporting ATPase 646 795 - -
Gabi1195g00002 1032 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 1012 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi1195g00002 1032 Pfam Cation transporting ATPase, C-terminus 835 1008 IPR006068 -
Gabi1195g00002 1032 FunFam Calcium-transporting ATPase 15 75 - -
Gabi1195g00002 1032 Coils Coil 1031 1032 - -
Gabi1195g00002 1032 SFLD p-type atpase 431 803 IPR044492 -
Gabi1195g00002 1032 SUPERFAMILY HAD-like 448 855 IPR036412 -
Gabi1195g00002 1032 Gene3D - 164 1009 - -
Gabi1195g00002 1032 Gene3D - 446 795 IPR023214 -
Gabi1195g00002 1032 FunFam Calcium-transporting ATPase 211 332 - -
Gabi1195g00002 1032 ProSitePatterns E1-E2 ATPases phosphorylation site. 451 457 IPR018303 -
Gabi1195g00002 1032 SMART Cation_ATPase_N_a_2 112 186 IPR004014 -
Gabi1195g00002 1032 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 46 IPR024750 GO:0005516
Gabi1195g00002 1032 PRINTS P-type cation-transporting ATPase superfamily signature 647 658 - -
Gabi1195g00002 1032 PRINTS P-type cation-transporting ATPase superfamily signature 774 786 - -
Gabi1195g00002 1032 PRINTS P-type cation-transporting ATPase superfamily signature 280 294 - -
Gabi1195g00002 1032 PRINTS P-type cation-transporting ATPase superfamily signature 669 679 - -
Gabi1195g00002 1032 PRINTS P-type cation-transporting ATPase superfamily signature 449 463 - -
Gabi1195g00002 1032 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Gabi1195g00002 1032 Gene3D - 459 654 IPR023299 GO:0000166
Gabi1195g00002 1032 PANTHER CATION TRANSPORTING ATPASE 86 1011 - -
Gabi1195g00002 1032 NCBIfam HAD-IC family P-type ATPase 201 486 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1195g00002 1032 NCBIfam HAD-IC family P-type ATPase 715 838 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1195g00002 1032 NCBIfam HAD-IC family P-type ATPase 544 695 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1195g00002 1032 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1011 IPR023298 -
Gabi1195g00002 1032 CDD P-type_ATPase_Ca_PMCA-like 141 883 - -
Gabi1195g00002 1032 Gene3D - 132 332 - -
Gabi1195g00002 1032 SFLD C1.7: P-type atpase like 431 803 - -
Gabi1195g00002 1032 SUPERFAMILY Calcium ATPase, transduction domain A 234 330 IPR008250 -
Gabi1195g00002 1032 Gene3D - 15 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1195g00002 Gabi-Chr1195 65527 75382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1195g00002 59 1032 Primary Pumps ATPases AT3G57330 73.744 0.0 1493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1195g00002 K01537 - gmx:100791934 1722.6