Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1194g00002 ATGTCCTTGCTAACGGTGGCGCACCAAAGAGGATCAGGTGAGTTCTTAAAGTTCACGGCGCAGCAAGGCGGCGGTGACGGTGGTGATGGTGACGAGGAACATCCTTATGGTCATGATGGTGGAAGTTCTGGGGGATCTGAGTCACAAGGATTGAACCAAGTGATTCAACAAGGTGAGGTGGCAATGCAAGGTCCTATGGTGTCAGGGTATGGCAGGGCTCGAGAGTTGAATGAAATGGTTTCAGCTCTGACTCATGTGGTATCAGGTTCTGGCCAAAGCGGTGCTGAATGGTTCCAAGGAAGTGGTTTTCCTCTGACGTCAAGTTTTGGACATTCATCTTTAACTCCACGTTTGTCTTCTTTCTCTTCTTCTTCTTCTTCCACTTCTGGCCTTAACTTGCCCTCTGGCTCATGGGTTGGGCAAAAAAGAGGGCGTGAAGAAGAAAGTGGTGCTTCTCATCAATTGATACAACAATCTGTTCCTAGACTCTTCAGAAACATTGGTGACTTTTGGCTACCTTCTCAAGTAGAGTCATCATCATCATCAGTAACTGAAGAACCTTCAACCACCACCACCACCGTAGCCACCGTGGCGGCCACGCCATTAGGCCAAAATTCTTCACAAGAAGAAACAGGAGAGAGGAGAAGAAGGTACAGGGGAGTGAGGCAAAGACCATGGGGAAAATGGGCTGCAGAAATTCGTGATCCACACAAAGCAGCAAGGGTTTGGCTTGGAACATTTGAAACAGCAGAAGCTGCAGCAAGAGCTTATGATGAAGCTGCATTGAGGTTCAGAGGCAATAGAGCAAAACTAAACTTCCCAGAAAATGTTAGAGCAATGCCACCACAACTTCAACCTTTTCCGGCCACAGCCACTACTCAATTCCTTCCACTCCCCGCACCAGCGGCCGCAACCGCCACACCGCCGCAACCATTCATGCCACCACCGTTTCAGGGTTCCTCTGATTTGATCAGAGATTATTGGGAATATTCTCAGCTTCTTCAGAGTCCTGAAGACTTTCATCATCAGCTTCAACAACAGCAACATCAACAACAACAACAACAAAACCAACCTTCTAGTTTGCTTCAGCAGTGGTACTATAATTCACAATTGGGTGTACATGAATCTTCTTCATTGTTATCATCATCACCCTCTTTGTCTTCTTTTGTATCACCAAATGTATCATTTTCACCATCTACTCAATTTTCCTCTGCTTCATTTCCCCTGTTATCTAGTCAACAAATGGGCTATTTCCGGCCACCGGGAAACCACCCTCACGGAGGAGGAATCGGCGGAGAGGGGTCAGAGTTTCCGCCGTCAACATGGTCAGATACCAGTGGCCATCCACCACCTTCTGGTTGA 1362 0.475 MSLLTVAHQRGSGEFLKFTAQQGGGDGGDGDEEHPYGHDGGSSGGSESQGLNQVIQQGEVAMQGPMVSGYGRARELNEMVSALTHVVSGSGQSGAEWFQGSGFPLTSSFGHSSLTPRLSSFSSSSSSTSGLNLPSGSWVGQKRGREEESGASHQLIQQSVPRLFRNIGDFWLPSQVESSSSSVTEEPSTTTTTVATVAATPLGQNSSQEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGNRAKLNFPENVRAMPPQLQPFPATATTQFLPLPAPAAATATPPQPFMPPPFQGSSDLIRDYWEYSQLLQSPEDFHHQLQQQQHQQQQQQNQPSSLLQQWYYNSQLGVHESSSLLSSSPSLSSFVSPNVSFSPSTQFSSASFPLLSSQQMGYFRPPGNHPHGGGIGGEGSEFPPSTWSDTSGHPPPSG 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1194g00002 453 SUPERFAMILY DNA-binding domain 217 275 IPR016177 GO:0003677
Gabi1194g00002 453 FunFam Ethylene-responsive transcription factor 2 216 275 - -
Gabi1194g00002 453 Pfam AP2 domain 217 266 IPR001471 GO:0003700|GO:0006355
Gabi1194g00002 453 ProSiteProfiles AP2/ERF domain profile. 217 274 IPR001471 GO:0003700|GO:0006355
Gabi1194g00002 453 MobiDBLite consensus disorder prediction 199 219 - -
Gabi1194g00002 453 MobiDBLite consensus disorder prediction 114 136 - -
Gabi1194g00002 453 MobiDBLite consensus disorder prediction 438 453 - -
Gabi1194g00002 453 Gene3D AP2/ERF domain 216 276 IPR036955 GO:0003700|GO:0006355
Gabi1194g00002 453 CDD AP2 225 276 IPR001471 GO:0003700|GO:0006355
Gabi1194g00002 453 MobiDBLite consensus disorder prediction 18 49 - -
Gabi1194g00002 453 SMART rav1_2 217 280 IPR001471 GO:0003700|GO:0006355
Gabi1194g00002 453 PRINTS Ethylene responsive element binding protein signature 240 256 IPR001471 GO:0003700|GO:0006355
Gabi1194g00002 453 PRINTS Ethylene responsive element binding protein signature 218 229 IPR001471 GO:0003700|GO:0006355
Gabi1194g00002 453 MobiDBLite consensus disorder prediction 413 453 - -
Gabi1194g00002 453 PANTHER DNA-BINDING DOMAIN 182 360 IPR044808 GO:0003700|GO:0009873
Gabi1194g00002 453 MobiDBLite consensus disorder prediction 114 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1194g00002 Gabi-Chr1194 67340 69205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1194g00002 208 291 AP2-EREBP Transcription Factor Family AT2G33710 72.619 6.74e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1194g00002 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1194g00002 - - gmx:100804843 351.673