LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1193g00029	ATGGCAGTTTTTTCTTCAAGGCTACTTAGTCTTTCCTTTCTCTGTTGTGTCGTCCTTATAATCATTTTCATATCTCAAGCCAGCGCTGACAATAATACACAAAACTACCACTACTTTTGTGATTTTAATAACAGATCAGGTAACTACGCAGCCAACAGCACCTATCACACGAACCTCAACACCCTTTTGTCCACTCTCACTTCCAACACAGAAATTGACTATGGTTTCTACAACTTGTCATATGGCCAAAACACTGACAGAGTAAACGCTATTGGGTTGTGCAGAGGAGATATTAAGCCAGATGCTTGCCGAAGTTGCCTTAGTGGTTCAAGAGCCAATCTGACACAGCTGTGTCCAAACCAGAAGGAGGCAATTGGGTGGTATGAGGATGAGAAATGCATGTTGCGTTACTCAGACCGCTCAATATTTGACACCATGGAAACTGGACCTGCTTATTATGCCAACAACATGCTAAATGCAACGAATTTGGATGAGTTCAATCAAGTGTTGAATACCTTGCTCGGAAGCCTAAGAAGCAAAGCTGCATCAGGTGACTCTCGTCTTAAGTATGCCGCGGATAAATCAAGTGACCGAAACTTTCAAACCATATATGGTCTTGTGCAGTGCACGCCCGATTTGTCTGCTTCACAGTGTGATGATTGCTTGGTTCAGTCCATTGCACGTATCCCAATAGATTGTTGTAAAGACAGGATAGGTGGAAGAGTTGTTAGACCTAGTTGTAATATGAGGTTCGAAACCTCCTTCCTTTTCTATGATCCTACACCATCAACCACCACCACTAACACTTCATCTTCCTCTGGAGGAAAGAGCAACACAACTGTCATCGCCATAACAGTACCAATTGCTGTTGTTGTTGTGGTGCTCATTTTTATCTGTATCTATTTTAGAGCGAGGAAGCCAACGAAGAAGTATAAAACTCAAGAAAGAGAAGAAGATGATGAAGATGATGATGATATTGAAATTTCTGAGTCATTGCAATTCAACTTTAACACCATTCGAGATGCTACGAATGACTTTTCTGATTCTAATAAACTCGGACAAGGCGGATTTGGGGCTGTTTACAGGGGTAGTCTCTCCGATGGACAAGAAATTGCTGTCAAAAGGTTGTCCAAGGATTCTGGCCAAGGAGATCTAGAATTCAAGAATGAAGTGCTTTTAGTGGCTAAGCTCCAACATCGAAATTTAGTAAGACTACTTGGTTTCTGTCTGGAAGGAAAAGAAAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGATCAAACCAAGAGAGCACAATTAAATTGGGAGAGCCGCTACAAAATCATTGCTGGTATTGCTCGAGGCATTCTTTACCTTCATGAGGATTCTCGACTGCGCATTATCCATCGTGATCTCAAAGCAAGTAACATTCTCTTAGATGGAGAGATGAGTCCCAAGATATCCGATTTTGGCATGGCAAGACTGTTTATTGTGGACCAAACTCATGGAGATACAAATAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAGTTTTCAGTGAAGTCAGATGTCTTTAGTTTTGGTGTACTGGTTCTTGAGATTGTGAGTGGCCAGAAAAATTGCAGCATTGGTCAAGGGGAGAATATAGAGGATCTACTGAGCCTTGTACGTCATCCTTTTCTTCCCATTATATATTCCTTGAAGTTAGAAGAAAGCATGGAGAAATTGGAGGGACGGATCAGCCACAAATATTATAGATCCCATGTTAAACAATGA	1797	0.4101	MAVFSSRLLSLSFLCCVVLIIIFISQASADNNTQNYHYFCDFNNRSGNYAANSTYHTNLNTLLSTLTSNTEIDYGFYNLSYGQNTDRVNAIGLCRGDIKPDACRSCLSGSRANLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFDTMETGPAYYANNMLNATNLDEFNQVLNTLLGSLRSKAASGDSRLKYAADKSSDRNFQTIYGLVQCTPDLSASQCDDCLVQSIARIPIDCCKDRIGGRVVRPSCNMRFETSFLFYDPTPSTTTTNTSSSSGGKSNTTVIAITVPIAVVVVVLIFICIYFRARKPTKKYKTQEREEDDEDDDDIEISESLQFNFNTIRDATNDFSDSNKLGQGGFGAVYRGSLSDGQEIAVKRLSKDSGQGDLEFKNEVLLVAKLQHRNLVRLLGFCLEGKERLLVYEFVPNKSLDYFIFDQTKRAQLNWESRYKIIAGIARGILYLHEDSRLRIIHRDLKASNILLDGEMSPKISDFGMARLFIVDQTHGDTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGQKNCSIGQGENIEDLLSLVRHPFLPIIYSLKLEESMEKLEGRISHKYYRSHVKQ	598

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1193g00029	598	FunFam	Lectin-domain containing receptor kinase A4.3	422	597	-	-
	Gabi1193g00029	598	SMART	serkin_6	346	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1193g00029	598	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	43	562	-	-
	Gabi1193g00029	598	Gene3D	-	150	255	IPR038408	-
	Gabi1193g00029	598	Gene3D	-	35	141	IPR038408	-
	Gabi1193g00029	598	Pfam	Protein tyrosine and serine/threonine kinase	349	547	IPR001245	GO:0004672\|GO:0006468
	Gabi1193g00029	598	Gene3D	Transferase(Phosphotransferase) domain 1	422	596	-	-
	Gabi1193g00029	598	Gene3D	Phosphorylase Kinase; domain 1	306	421	-	-
	Gabi1193g00029	598	ProSiteProfiles	Gnk2-homologous domain profile.	148	256	IPR002902	-
	Gabi1193g00029	598	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	33	142	-	-
	Gabi1193g00029	598	ProSitePatterns	Protein kinases ATP-binding region signature.	352	374	IPR017441	GO:0005524
	Gabi1193g00029	598	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	467	479	IPR008271	GO:0004672\|GO:0006468
	Gabi1193g00029	598	FunFam	Cysteine-rich receptor-like protein kinase 10	150	255	-	-
	Gabi1193g00029	598	ProSiteProfiles	Protein kinase domain profile.	346	598	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1193g00029	598	FunFam	Cysteine-rich receptor-like protein kinase 17	314	421	-	-
	Gabi1193g00029	598	Pfam	Salt stress response/antifungal	160	253	IPR002902	-
	Gabi1193g00029	598	Pfam	Salt stress response/antifungal	40	139	IPR002902	-
	Gabi1193g00029	598	ProSiteProfiles	Gnk2-homologous domain profile.	37	142	IPR002902	-
	Gabi1193g00029	598	SUPERFAMILY	Protein kinase-like (PK-like)	334	572	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1193g00029	Gabi-Chr1193	192098	195146	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1193g00029	13	563	Receptor kinase-like Gene Family	AT4G21410	50.432	1.37e-179	522

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gabi1193g00029		PK_Tyr_Ser-Thr	1.8e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1193g00029	-		-	gmx:113000774	753.051