Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00028 ATGGCAGTTTTTTCTTCAAGGCTACTTAGTCTTTCCTTTCTCTGTTGTGTCGTCCTTATAATCATTTTCATATCTCAAGCCAGCGCTGACAATAATACACAAAACTACCACTACTTTTGTGATTTTAATAACAGATCAGGTAACTACGCAGCCAACAGCACCTATCACACGAACCTCAACACCCTTTTGTCCACTCTCACTTCCAACACAGAAATTGACTATGGTTTCTACAACTTGTCATATGGCCAAAACACTGACAGAGTAAACGCTATTGGGTTGTGCAGAGGAGATATTAAGCCAGATGCTTGCCGAAGTTGCCTTAGTGGTTCAAGAGCCAATCTGACACAGCTGTGTCCAAACCAGAAGGAGGCAATTGGGTGGTATGAGGATGAGAAATGCATGTTGCGTTACTCAGACCGCTCAATATTTGACACCATGGAAACTGGACCTGCTTATTATGCCAACAACATGCTAAATGCAACGAATTTGGATGAGTTCAATCAAGTGTTGAATACCTTGCTCGGAAGCCTAAGAAGCAAAGCTGCATCAGGTGACTCTCGTCTTAAGTATGCCGCGGATAAATCAAGTGACCGAAACTTTCAAACCATATATGGTCTTGTGCAGTGCACGCCCGATTTGTCTGCTTCACAGTGTGATGATTGCTTGGTTCAGTCCATTGCACGTATCCCAATAGATTGTTGTAAAGACAGGATAGGTGGAAGAGTTGTTAGACCTAGTTGTAATATGAGGTTCGAAACCTCCTTCCTTTTCTATGATCCTACACCATCAACCACCACCACTAACACTTCATCTTCCTCTGGAGGAAAGAGCAACACAACTGTCATCGCCATAACAGTACCAATTGCTGTTGTTGTTGTGGTGCTCATTTTTATCTGTATCTATTTTAGAGCGAGGAAGCCAACGAAGAAGTATAAAACTCAAGAAAGAGAAGAAGATGATGAAGATGATGATGATATTGAAATTTCTGAGTCATTGCAATTCAACTTTAACACCATTCGAGATGCTACGAATGACTTTTCTGATTCTAATAAACTCGGACAAGGCGGATTTGGGGCTGTTTACAGGGGTAGTCTCTCCGATGGACAAGAAATTGCTGTCAAAAGGTTGTCCAAGGATTCTGGCCAAGGAGATCTAGAATTCAAGAATGAAGTGCTTTTAGTGGCTAAGCTCCAACATCGAAATTTAGTAAGACTACTTGGTTTCTGTCTGGAAGGAAAAGAAAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGATCAAACCAAGAGAGCACAATTAAATTGGGAGAGCCGCTACAAAATCATTGCTGGTATTGCTCGAGGCATTCTTTACCTTCATGAGGATTCTCGACTGCGCATTATCCATCGTGATCTCAAAGCAAGTAACATTCTCTTAGATGGAGAGATGAGTCCCAAGATATCCGATTTTGGCATGGCAAGACTGTTTATTGTGGACCAAACTCATGGAGATACAAATAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAGTTTTCAGTGAAGTCAGATGTCTTTAGTTTTGGTGTACTGGTTCTTGAGATTGTGAGTGGCCAGAAAAATTGCAGCATTGGTCAAGGGGAGAATATAGAGGATCTACTGAGCCTTGCATGGAGAAATTGGAGGGACGGATCAGCCACAAATATTATAGATCCCATGTTAAACAATGATTCACGAAATGAAATAATGAGATGCATCCACATTGGGTTACTTTGTGTTCAAGAAAATGTAGCTAGCAGACCAACCATGGCTTCCGTTGTACTGATGCTTAATAGTTATTCTGTCACTCTGTCGCTACCTTCAGAACCTGCATTTTATGTGGATAGTAGAACTGGAAACCTTCCAGACATGTCATGGGAGTATAATTCAGGGGCAACAAGATCAAGCGAATCCACAACTAAATCAGCTCAAGCATCGGTCGACGAGGCTCCAATTACTGAGCTACATACTCGCTAG 2034 0.4145 MAVFSSRLLSLSFLCCVVLIIIFISQASADNNTQNYHYFCDFNNRSGNYAANSTYHTNLNTLLSTLTSNTEIDYGFYNLSYGQNTDRVNAIGLCRGDIKPDACRSCLSGSRANLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFDTMETGPAYYANNMLNATNLDEFNQVLNTLLGSLRSKAASGDSRLKYAADKSSDRNFQTIYGLVQCTPDLSASQCDDCLVQSIARIPIDCCKDRIGGRVVRPSCNMRFETSFLFYDPTPSTTTTNTSSSSGGKSNTTVIAITVPIAVVVVVLIFICIYFRARKPTKKYKTQEREEDDEDDDDIEISESLQFNFNTIRDATNDFSDSNKLGQGGFGAVYRGSLSDGQEIAVKRLSKDSGQGDLEFKNEVLLVAKLQHRNLVRLLGFCLEGKERLLVYEFVPNKSLDYFIFDQTKRAQLNWESRYKIIAGIARGILYLHEDSRLRIIHRDLKASNILLDGEMSPKISDFGMARLFIVDQTHGDTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGQKNCSIGQGENIEDLLSLAWRNWRDGSATNIIDPMLNNDSRNEIMRCIHIGLLCVQENVASRPTMASVVLMLNSYSVTLSLPSEPAFYVDSRTGNLPDMSWEYNSGATRSSESTTKSAQASVDEAPITELHTR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00028 677 SUPERFAMILY Protein kinase-like (PK-like) 334 634 IPR011009 -
Gabi1193g00028 677 CDD STKc_IRAK 352 617 - -
Gabi1193g00028 677 MobiDBLite consensus disorder prediction 644 666 - -
Gabi1193g00028 677 Gene3D - 150 255 IPR038408 -
Gabi1193g00028 677 Gene3D - 35 141 IPR038408 -
Gabi1193g00028 677 Gene3D Transferase(Phosphotransferase) domain 1 422 625 - -
Gabi1193g00028 677 FunFam Cysteine-rich receptor-like protein kinase 17 314 421 - -
Gabi1193g00028 677 Gene3D Phosphorylase Kinase; domain 1 306 421 - -
Gabi1193g00028 677 ProSiteProfiles Gnk2-homologous domain profile. 148 256 IPR002902 -
Gabi1193g00028 677 FunFam Cysteine-rich receptor-like protein kinase 10 150 255 - -
Gabi1193g00028 677 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Gabi1193g00028 677 ProSiteProfiles Protein kinase domain profile. 346 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00028 677 SMART serkin_6 346 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00028 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Gabi1193g00028 677 MobiDBLite consensus disorder prediction 644 677 - -
Gabi1193g00028 677 FunFam cysteine-rich receptor-like protein kinase 10 422 623 - -
Gabi1193g00028 677 ProSiteProfiles Gnk2-homologous domain profile. 37 142 IPR002902 -
Gabi1193g00028 677 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 33 142 - -
Gabi1193g00028 677 Pfam Salt stress response/antifungal 160 253 IPR002902 -
Gabi1193g00028 677 Pfam Salt stress response/antifungal 40 139 IPR002902 -
Gabi1193g00028 677 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 43 669 - -
Gabi1193g00028 677 Pfam Protein tyrosine and serine/threonine kinase 349 613 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00028 Gabi-Chr1193 192098 195631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00028 13 635 Receptor kinase-like Gene Family AT4G21410 51.613 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00028 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00028 - - gmx:113000774 883.634