Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00027 ATGGCAGTTCTTTCTTTAAGGTTACTTTCCTTTCTCTGTTGTCTCATTGTCATAATCATTTTCATATCTCAAGCCAGCGCTGATGAAAGTTCACAAATATACCAATACTTCTGTGGTTTTAATAACAAGGGTAACTACACGGCCAATAGCACCTATCACACGAACCTCAACACCCTTTTGTCCAATCTCACTCCCAACACAGAAATTGACTACGGTTTCTACAATTTGTCATATGGACAAAACAATGACAAAGTAAACGCTATTGGGTTGTGCAGAGGAGATATTAAGTCAGATGCTTGCCGAGGTTGTCTCAAAGATTCCATAGCCAATCTGACACAGCTCTGTCCAAACCAGAAGGAAGCAATTGGTTGGTATGAGGATGAGAAATGCATGTTGCGTTACTCAGACCGCTCAATATTTGACACCATGGAAACTGGACCTGCGTATTTTGTGTGGAACTTACAGAATGCAACAGAGGTGGACCAGTTCAATAAGGTGCTCAAGAACTTGCTCGAAAGCCTAAGAAGCAAAGCTACATCAGGTGACTCTCGTCGTAAATATGCTACGGATAACGCAGCTGCCTCAAATAATCAAATCATATATGGTCTTGCTCAATGCACGCCTGATTTGTCTGCTTTACAGTGTGATAACTGCTTGGTCCAGTCTATCGCAGAATTCCCAAATTGTTGTAATAACAGGATAGGTGCCAGAGTTATTAGACCCAGTTGTAGTTTGAGATACGAAATATCTCGCTTCTATGAGTTGACACCAGATACACCGTCACCATCACCGTCACCGCTTCCATCGCTGCCACCTCCTCCGTCCACTTCTAAAACTTCCAGCAACACAACTGTCATCGCCATAACAGTACCAATTGCTGTTGTTGTTGTGGTGCTCATTTTTATCTGTATCTATTTTAGAGCGAGGAAGCCAACGAAGAAAGAAGAAGATGATGAAGATGATGATGATATTGAAATTTCTGAGTCATTGCAATTCAACTTTAACACCATTCGAGATGCTACGAATGACTTTTCTGATTCTAATAAACTCGGACAAGGCGGATTTGGGGCTGTTTACAGGGGTAGTCTCTCCGATGGACAAGAAATTGCTGTCAAAAGGTTGTCCAAGGATTCTGGCCAAGGAGATCTAGAATTCAAGAATGAAGTGCTTTTAGTGGCTAAGCTCCAACATCGAAATTTAGTAAGACTACTTGGTTTCTGTCTGGAAGGAAAAGAAAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGATCAAACCAAGAGAGCACAATTAAATTGGGAGAGCCGCTACAAAATCATTGCTGGTATTGCTCGAGGCATTCTTTACCTTCATGAGGATTCTCGACTGCGCATTATCCATCGTGATCTCAAAGCAAGTAACATTCTCTTAGATGGAGAGATGAGTCCCAAGATATCCGATTTTGGCATGGCAAGACTGTTTATTGTGGACCAAACTCATGGAGATACAAATAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAGTTTTCAGTGAAGTCAGATGTCTTTAGTTTTGGTGTACTGGTTCTTGAGATTGTGAGTGGCCAGAAAAATTGCAGCATTGGTCAAGGGGAGAATATAGAGGATCTACTGAGCCTTGCATGGAGAAATTGGAGGGACGGATCAGCCACAAATATTATAGATCCCATGTTAAACAATGATTCACGAAATGAAATAATGAGATGCATCCACATTGGGTTACTTTGTGTTCAAGAAAATGTAGCTAGCAGACCAACCATGGCTTCCGTTGTACTGATGCTTAATAGTTATTCTGTCACTCTGTCGCTACCTTCAGAACCTGCATTTTATGTGGATAGTAGAACTGGAAACCTTCCAGACATGTCATGGGAGTATAATTCAGGGGCAACAAGATCAAGCGAATCCACAACTAAATCAGCTCAAGCATCGGTCGACGAGGCTCCAATTACTGAGCTACATACTCGCTAG 2028 0.4147 MAVLSLRLLSFLCCLIVIIIFISQASADESSQIYQYFCGFNNKGNYTANSTYHTNLNTLLSNLTPNTEIDYGFYNLSYGQNNDKVNAIGLCRGDIKSDACRGCLKDSIANLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFDTMETGPAYFVWNLQNATEVDQFNKVLKNLLESLRSKATSGDSRRKYATDNAAASNNQIIYGLAQCTPDLSALQCDNCLVQSIAEFPNCCNNRIGARVIRPSCSLRYEISRFYELTPDTPSPSPSPLPSLPPPPSTSKTSSNTTVIAITVPIAVVVVVLIFICIYFRARKPTKKEEDDEDDDDIEISESLQFNFNTIRDATNDFSDSNKLGQGGFGAVYRGSLSDGQEIAVKRLSKDSGQGDLEFKNEVLLVAKLQHRNLVRLLGFCLEGKERLLVYEFVPNKSLDYFIFDQTKRAQLNWESRYKIIAGIARGILYLHEDSRLRIIHRDLKASNILLDGEMSPKISDFGMARLFIVDQTHGDTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGQKNCSIGQGENIEDLLSLAWRNWRDGSATNIIDPMLNNDSRNEIMRCIHIGLLCVQENVASRPTMASVVLMLNSYSVTLSLPSEPAFYVDSRTGNLPDMSWEYNSGATRSSESTTKSAQASVDEAPITELHTR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00027 675 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Gabi1193g00027 675 Gene3D - 147 252 IPR038408 -
Gabi1193g00027 675 Gene3D - 32 138 IPR038408 -
Gabi1193g00027 675 Gene3D Transferase(Phosphotransferase) domain 1 420 623 - -
Gabi1193g00027 675 FunFam Cysteine-rich receptor-like protein kinase 17 312 419 - -
Gabi1193g00027 675 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Gabi1193g00027 675 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Gabi1193g00027 675 MobiDBLite consensus disorder prediction 259 275 - -
Gabi1193g00027 675 Gene3D Phosphorylase Kinase; domain 1 307 419 - -
Gabi1193g00027 675 SUPERFAMILY Protein kinase-like (PK-like) 332 632 IPR011009 -
Gabi1193g00027 675 SMART serkin_6 344 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00027 675 Pfam Protein tyrosine and serine/threonine kinase 347 611 IPR001245 GO:0004672|GO:0006468
Gabi1193g00027 675 ProSiteProfiles Protein kinase domain profile. 344 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00027 675 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 31 139 - -
Gabi1193g00027 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Gabi1193g00027 675 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 667 - -
Gabi1193g00027 675 MobiDBLite consensus disorder prediction 642 664 - -
Gabi1193g00027 675 Pfam Salt stress response/antifungal 38 136 IPR002902 -
Gabi1193g00027 675 Pfam Salt stress response/antifungal 155 248 IPR002902 -
Gabi1193g00027 675 FunFam Cysteine-rich receptor-like protein kinase 10 147 252 - -
Gabi1193g00027 675 FunFam cysteine-rich receptor-like protein kinase 10 420 621 - -
Gabi1193g00027 675 MobiDBLite consensus disorder prediction 642 675 - -
Gabi1193g00027 675 MobiDBLite consensus disorder prediction 257 281 - -
Gabi1193g00027 675 CDD STKc_IRAK 350 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00027 Gabi-Chr1193 182862 195631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00027 6 633 Receptor kinase-like Gene Family AT4G21410 50.536 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00027 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00027 - - lang:109335396 848.58