Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00025 ATGGCAGTTCTTTCTTTAAGGTTACTTTCCTTTCTCTGTTGTCTCATTGTCATAATCATTTTCATATCTCAAGCCAGCGCTGATGAAAGTTCACAAATATACCAATACTTCTGTGGTTTTAATAACAAGGGTAACTACACGGCCAATAGCACCTATCACACGAACCTCAACACCCTTTTGTCCAATCTCACTCCCAACACAGAAATTGACTACGGTTTCTACAATTTGTCATATGGACAAAACAATGACAAAGTAAACGCTATTGGGTTGTGCAGAGGAGATATTAAGTCAGATGCTTGCCGAGGTTGTCTCAAAGATTCCATAGCCAATCTGACACAGCTCTGTCCAAACCAGAAGGAAGCAATTGGTTGGTATGAGGATGAGAAATGCATGTTGCGTTACTCAGACCGCTCAATATTTGACACCATGGAAACTGGACCTGCGTATTTTGTGTGGAACTTACAGAATGCAACAGAGGTGGACCAGTTCAATAAGGTGCTCAAGAACTTGCTCGAAAGCCTAAGAAGCAAAGCTACATCAGGTGACTCTCGTCGTAAATATGCTACGGATAACGCAGCTGCCTCAAATAATCAAATCATATATGGTCTTGCTCAATGCACGCCTGATTTGTCTGCTTTACAGTGTGATAACTGCTTGGTCCAGTCTATCGCAGAATTCCCAAATTGTTGTAATAACAGGATAGGTGCCAGAGTTATTAGACCCAGTTGTAGTTTGAGATACGAAATATCTCGCTTCTATGAGTTGACACCAGATACACCGTCACCATCACCGTCACCGCTTCCATCGCTGCCACCTCCTCCGTCCACTTCTAAAACTTCCAATAGCAACACAACTGTCATCGCCATAACAGTACCAATTGCTGTTGTTGTTGTGGTGCTCATTTTTATCTGTATCTATTTTAGAGCGAGGAAGCCAACGAAGAAGTATAAAAATGATGATGATATTGAAATTTCTGAGTCATTGCAATTCAACTTTAACACCATTCGAGATGCTACGAATGACTTTTCTGATTCTAATAAACTCGGACAAGGCGGATTTGGGGCTGTTTACAGGGGTAGTCTCTCCGATGGACAAGAAATTGCTGTCAAAAGGTTGTCCAAGGATTCTGGCCAAGGAGATCTAGAATTCAAGAATGAAGTGCTTTTAGTGGCTAAGCTCCAACATCGAAATTTAGTAAGACTACTTGGTTTCTGTCTGGAAGGAAAAGAAAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGATCAAACCAAGAGAGCACAATTAAATTGGGAGAGCCGCTACAAAATCATTGCTGGTATTGCTCGAGGCATTCTTTACCTTCATGAGGATTCTCGACTGCGCATTATCCATCGTGATCTCAAAGCAAGTAACATTCTCTTAGATGGAGAGATGAGTCCCAAGATATCCGATTTTGGCATGGCAAGACTGTTTATTGTGGACCAAACTCATGGAGATACAAATAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAGTTTTCAGTGAAGTCAGATGTCTTTAGTTTTGGTGTACTGGTTCTTGAGATTGTGAGTGGCCAGAAAAATTGCAGCATTGGTCAAGGGGAGAATATAGAGGATCTACTGAGCCTTGCATGGAGAAATTGGAGGGACGGATCAGCCACAAATATTATAGATCCCATGTTAAACAATGATTCACGAAATGAAATAATGAGATGCATCCACATTGGGTTACTTTGTGTTCAAGAAAATGTAGCTAGCAGACCAACCATGGCTTCCGTTGTACTGATGCTTAATAGTTATTCTGTCACTCTGTCGCTACCTTCAGAACCTGCATTTTATGTGGATAGTAGAACTGGAAACCTTCCAGACATGTCATGGGAGTATAATTCAGGGGCAACAAGATCAAGCGAATCCACAACTAAATCAGCTCAAGCATCGGTCGACGAGGCTCCAATTACTGAGCTACATACTCGCTAG 2022 0.4135 MAVLSLRLLSFLCCLIVIIIFISQASADESSQIYQYFCGFNNKGNYTANSTYHTNLNTLLSNLTPNTEIDYGFYNLSYGQNNDKVNAIGLCRGDIKSDACRGCLKDSIANLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFDTMETGPAYFVWNLQNATEVDQFNKVLKNLLESLRSKATSGDSRRKYATDNAAASNNQIIYGLAQCTPDLSALQCDNCLVQSIAEFPNCCNNRIGARVIRPSCSLRYEISRFYELTPDTPSPSPSPLPSLPPPPSTSKTSNSNTTVIAITVPIAVVVVVLIFICIYFRARKPTKKYKNDDDIEISESLQFNFNTIRDATNDFSDSNKLGQGGFGAVYRGSLSDGQEIAVKRLSKDSGQGDLEFKNEVLLVAKLQHRNLVRLLGFCLEGKERLLVYEFVPNKSLDYFIFDQTKRAQLNWESRYKIIAGIARGILYLHEDSRLRIIHRDLKASNILLDGEMSPKISDFGMARLFIVDQTHGDTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGQKNCSIGQGENIEDLLSLAWRNWRDGSATNIIDPMLNNDSRNEIMRCIHIGLLCVQENVASRPTMASVVLMLNSYSVTLSLPSEPAFYVDSRTGNLPDMSWEYNSGATRSSESTTKSAQASVDEAPITELHTR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00025 673 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 31 139 - -
Gabi1193g00025 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Gabi1193g00025 673 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Gabi1193g00025 673 Gene3D - 147 252 IPR038408 -
Gabi1193g00025 673 Gene3D - 32 138 IPR038408 -
Gabi1193g00025 673 CDD STKc_IRAK 348 613 - -
Gabi1193g00025 673 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 665 - -
Gabi1193g00025 673 FunFam cysteine-rich receptor-like protein kinase 10 418 619 - -
Gabi1193g00025 673 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Gabi1193g00025 673 MobiDBLite consensus disorder prediction 259 275 - -
Gabi1193g00025 673 MobiDBLite consensus disorder prediction 640 673 - -
Gabi1193g00025 673 Pfam Protein tyrosine and serine/threonine kinase 345 609 IPR001245 GO:0004672|GO:0006468
Gabi1193g00025 673 SUPERFAMILY Protein kinase-like (PK-like) 330 630 IPR011009 -
Gabi1193g00025 673 Gene3D Transferase(Phosphotransferase) domain 1 418 621 - -
Gabi1193g00025 673 FunFam Cysteine-rich receptor-like protein kinase 17 311 417 - -
Gabi1193g00025 673 SMART serkin_6 342 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00025 673 FunFam Cysteine-rich receptor-like protein kinase 10 147 252 - -
Gabi1193g00025 673 ProSiteProfiles Protein kinase domain profile. 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00025 673 MobiDBLite consensus disorder prediction 640 662 - -
Gabi1193g00025 673 Gene3D Phosphorylase Kinase; domain 1 306 417 - -
Gabi1193g00025 673 MobiDBLite consensus disorder prediction 257 281 - -
Gabi1193g00025 673 Pfam Salt stress response/antifungal 38 136 IPR002902 -
Gabi1193g00025 673 Pfam Salt stress response/antifungal 155 248 IPR002902 -
Gabi1193g00025 673 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00025 Gabi-Chr1193 182862 195631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00025 6 631 Receptor kinase-like Gene Family AT4G21410 51.302 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00025 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00025 - - gmx:100782800 840.876