Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00024 ATGGCAGTTCTTTCTTTAAGGTTACTTTCCTTTCTCTGTTGTCTCATTGTCATAATCATTTTCATATCTCAAGCCAGCGCTGATGAAAGTTCACAAATATACCAATACTTCTGTGGTTTTAATAACAAGGGTAACTACACGGCCAATAGCACCTATCACACGAACCTCAACACCCTTTTGTCCAATCTCACTCCCAACACAGAAATTGACTACGGTTTCTACAATTTGTCATATGGACAAAACAATGACAAAGTAAACGCTATTGGGTTGTGCAGAGGAGATATTAAGTCAGATGCTTGCCGAGGTTGTCTCAAAGATTCCATAGCCAATCTGACACAGCTCTGTCCAAACCAGAAGGAAGCAATTGGTTGGTATGAGGATGAGAAATGCATGTTGCGTTACTCAGACCGCTCAATATTTGACACCATGGAAACTGGACCTGCGTATTTTGTGTGGAACTTACAGAATGCAACAGAGGTGGACCAGTTCAATAAGGTGCTCAAGAACTTGCTCGAAAGCCTAAGAAGCAAAGCTACATCAGGTGACTCTCGTCGTAAATATGCTACGGATAACGCAGCTGCCTCAAATAATCAAATCATATATGGTCTTGCTCAATGCACGCCTGATTTGTCTGCTTTACAGTGTGATAACTGCTTGGTCCAGTCTATCGCAGAATTCCCAAATTGTTGTAATAACAGGATAGGTGCCAGAGTTATTAGACCCAGTTGTAGTTTGAGATACGAAATATCTCGCTTCTATGAGTTGACACCAGATACACCGTCACCATCACCGTCACCGCTTCCATCGCTGCCACCTCCTCCGTCCACTTCTAAAACTTCCGTGCAAGGAAAGAGCAACACAACTGTCATCGCCATAACAGTACCAATTGCTGTTGTTGTTGTGGTGCTCATTTTTATCTGTATCTATTTTAGAGCGAGGAAGCCAACGAAGAAGTATAAAAAAGATGATGAAGATGATGATGATATTGAAATTTCTGAGTCATTGCAATTCAACTTTAACACCATTCGAGATGCTACGAATGACTTTTCTGATTCTAATAAACTCGGACAAGGCGGATTTGGGGCTGTTTACAGGGGTAGTCTCTCCGATGGACAAGAAATTGCTGTCAAAAGGTTGTCCAAGGATTCTGGCCAAGGAGATCTAGAATTCAAGAATGAAGTGCTTTTAGTGGCTAAGCTCCAACATCGAAATTTAGTAAGACTACTTGGTTTCTGTCTGGAAGGAAAAGAAAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGATCAAACCAAGAGAGCACAATTAAATTGGGAGAGCCGCTACAAAATCATTGCTGGTATTGCTCGAGGCATTCTTTACCTTCATGAGGATTCTCGACTGCGCATTATCCATCGTGATCTCAAAGCAAGTAACATTCTCTTAGATGGAGAGATGAGTCCCAAGATATCCGATTTTGGCATGGCAAGACTGTTTATTGTGGACCAAACTCATGGAGATACAAATAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAGTTTTCAGTGAAGTCAGATGTCTTTAGTTTTGGTGTACTGGTTCTTGAGATTGTGAGTGGCCAGAAAAATTGCAGCATTGGTCAAGGGGAGAATATAGAGGATCTACTGAGCCTTGCATGGAGAAATTGGAGGGACGGATCAGCCACAAATATTATAGATCCCATGTTAAACAATGATTCACGAAATGAAATAATGAGATGCATCCACATTGGGTTACTTTGTGTTCAAGAAAATGTAGCTAGCAGACCAACCATGGCTTCCGTTGTACTGATGCTTAATAGTTATTCTGTCACTCTGTCGCTACCTTCAGAACCTGCATTTTATGTGGATAGTAGAACTGGAAACCTTCCAGACATGTCATGGGAGTATAATTCAGGGGCAACAAGATCAAGCGAATCCACAACTAAATCAGCTCAAGCATCGGTCGACGAGGCTCCAATTACTGAGCTACATACTCGCTAG 2043 0.4141 MAVLSLRLLSFLCCLIVIIIFISQASADESSQIYQYFCGFNNKGNYTANSTYHTNLNTLLSNLTPNTEIDYGFYNLSYGQNNDKVNAIGLCRGDIKSDACRGCLKDSIANLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFDTMETGPAYFVWNLQNATEVDQFNKVLKNLLESLRSKATSGDSRRKYATDNAAASNNQIIYGLAQCTPDLSALQCDNCLVQSIAEFPNCCNNRIGARVIRPSCSLRYEISRFYELTPDTPSPSPSPLPSLPPPPSTSKTSVQGKSNTTVIAITVPIAVVVVVLIFICIYFRARKPTKKYKKDDEDDDDIEISESLQFNFNTIRDATNDFSDSNKLGQGGFGAVYRGSLSDGQEIAVKRLSKDSGQGDLEFKNEVLLVAKLQHRNLVRLLGFCLEGKERLLVYEFVPNKSLDYFIFDQTKRAQLNWESRYKIIAGIARGILYLHEDSRLRIIHRDLKASNILLDGEMSPKISDFGMARLFIVDQTHGDTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGQKNCSIGQGENIEDLLSLAWRNWRDGSATNIIDPMLNNDSRNEIMRCIHIGLLCVQENVASRPTMASVVLMLNSYSVTLSLPSEPAFYVDSRTGNLPDMSWEYNSGATRSSESTTKSAQASVDEAPITELHTR 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00024 680 FunFam Cysteine-rich receptor-like protein kinase 17 318 424 - -
Gabi1193g00024 680 CDD STKc_IRAK 355 620 - -
Gabi1193g00024 680 Gene3D Transferase(Phosphotransferase) domain 1 425 628 - -
Gabi1193g00024 680 MobiDBLite consensus disorder prediction 647 669 - -
Gabi1193g00024 680 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Gabi1193g00024 680 MobiDBLite consensus disorder prediction 647 680 - -
Gabi1193g00024 680 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Gabi1193g00024 680 MobiDBLite consensus disorder prediction 259 275 - -
Gabi1193g00024 680 MobiDBLite consensus disorder prediction 257 282 - -
Gabi1193g00024 680 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 672 - -
Gabi1193g00024 680 Gene3D - 32 138 IPR038408 -
Gabi1193g00024 680 Gene3D - 147 252 IPR038408 -
Gabi1193g00024 680 SUPERFAMILY Protein kinase-like (PK-like) 337 637 IPR011009 -
Gabi1193g00024 680 Pfam Salt stress response/antifungal 38 136 IPR002902 -
Gabi1193g00024 680 Pfam Salt stress response/antifungal 155 248 IPR002902 -
Gabi1193g00024 680 FunFam Cysteine-rich receptor-like protein kinase 10 147 252 - -
Gabi1193g00024 680 Gene3D Phosphorylase Kinase; domain 1 311 424 - -
Gabi1193g00024 680 SMART serkin_6 349 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00024 680 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Gabi1193g00024 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Gabi1193g00024 680 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 31 139 - -
Gabi1193g00024 680 Pfam Protein tyrosine and serine/threonine kinase 352 616 IPR001245 GO:0004672|GO:0006468
Gabi1193g00024 680 FunFam cysteine-rich receptor-like protein kinase 10 425 626 - -
Gabi1193g00024 680 ProSiteProfiles Protein kinase domain profile. 349 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00024 Gabi-Chr1193 182862 195631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00024 6 638 Receptor kinase-like Gene Family AT4G21410 50.917 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00024 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00024 - - lang:109335396 854.358