Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00023 ATGGCAGTTCTTTCTTTAAGGTTACTTTCCTTTCTCTGTTGTCTCATTGTCATAATCATTTTCATATCTCAAGCCAGCGCTGATGAAAGTTCACAAATATACCAATACTTCTGTGGTTTTAATAACAAGGGTAACTACACGGCCAATAGCACCTATCACACGAACCTCAACACCCTTTTGTCCAATCTCACTCCCAACACAGAAATTGACTACGGTTTCTACAATTTGTCATATGGACAAAACAATGACAAAGTAAACGCTATTGGGTTGTGCAGAGGAGATATTAAGTCAGATGCTTGCCGAGGTTGTCTCAAAGATTCCATAGCCAATCTGACACAGCTCTGTCCAAACCAGAAGGAAGCAATTGGTTGGTATGAGGATGAGAAATGCATGTTGCGTTACTCAGACCGCTCAATATTTGACACCATGGAAACTGGACCTGCGTATTTTGTGTGGAACTTACAGAATGCAACAGAGGTGGACCAGTTCAATAAGGTGCTCAAGAACTTGCTCGAAAGCCTAAGAAGCAAAGCTACATCAGGTGACTCTCGTCGTAAATATGCTACGGATAACGCAGCTGCCTCAAATAATCAAATCATATATGGTCTTGCTCAATGCACGCCTGATTTGTCTGCTTTACAGTGTGATAACTGCTTGGTCCAGTCTATCGCAGAATTCCCAAATTGTTGTAATAACAGGATAGGTGCCAGAGTTATTAGACCCAGTTGTAGTTTGAGATACGAAATATCTCGCTTCTATGAGTTGACACCAGATACACCGTCACCATCACCGTCACCGCTTCCATCGCTGCCACCTCCTCCGTCCACTTCTAAAACTTCCGTGCAAGGAAAGAGCAACACAACTGTCATCGCCATAACAGTACCAATTGCTGTTGTTGTTGTGGTGCTCATTTTTATCTGTATCTATTTTAGAGCGAGGAAGCCAACGAAGAAGTATAAAACTCAAGAAAGAGAAGAAGATGATGAAGATGATGATGATATTGAAATTTCTGAGTCATTGCAATTCAACTTTAACACCATTCGAGATGCTACGAATGACTTTTCTGATTCTAATAAACTCGGACAAGGCGGATTTGGGGCTGTTTACAGGGGTAGTCTCTCCGATGGACAAGAAATTGCTGTCAAAAGGTTGTCCAAGGATTCTGGCCAAGGAGATCTAGAATTCAAGAATGAAGTGCTTTTAGTGGCTAAGCTCCAACATCGAAATTTAGTAAGACTACTTGGTTTCTGTCTGGAAGGAAAAGAAAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGATCAAACCAAGAGAGCACAATTAAATTGGGAGAGCCGCTACAAAATCATTGCTGGTATTGCTCGAGGCATTCTTTACCTTCATGAGGATTCTCGACTGCGCATTATCCATCGTGATCTCAAAGCAAGTAACATTCTCTTAGATGGAGAGATGAGTCCCAAGATATCCGATTTTGGCATGGCAAGACTGTTTATTGTGGACCAAACTCATGGAGATACAAATAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAGTTTTCAGTGAAGTCAGATGTCTTTAGTTTTGGTGTACTGGTTCTTGAGATTGTGAGTGGCCAGAAAAATTGCAGCATTGGTCAAGGGGAGAATATAGAGGATCTACTGAGCCTTGCATGGAGAAATTGGAGGGACGGATCAGCCACAAATATTATAGATCCCATGTTAAACAATGATTCACGAAATGAAATAATGAGATGCATCCACATTGGGTTACTTTGTGTTCAAGAAAATGTAGCTAGCAGACCAACCATGGCTTCCGTTGTACTGATGCTTAATAGTTATTCTGTCACTCTGTCGCTACCTTCAGAACCTGCATTTTATGTGGATAGTAGAACTGGAAACCTTCCAGACATGTCATGGGAGTATAATTCAGGGGCAACAAGATCAAGCGAATCCACAACTAAATCAGCTCAAGCATCGGTCGACGAGGCTCCAATTACTGAGCTACATACTCGCTAG 2058 0.414 MAVLSLRLLSFLCCLIVIIIFISQASADESSQIYQYFCGFNNKGNYTANSTYHTNLNTLLSNLTPNTEIDYGFYNLSYGQNNDKVNAIGLCRGDIKSDACRGCLKDSIANLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFDTMETGPAYFVWNLQNATEVDQFNKVLKNLLESLRSKATSGDSRRKYATDNAAASNNQIIYGLAQCTPDLSALQCDNCLVQSIAEFPNCCNNRIGARVIRPSCSLRYEISRFYELTPDTPSPSPSPLPSLPPPPSTSKTSVQGKSNTTVIAITVPIAVVVVVLIFICIYFRARKPTKKYKTQEREEDDEDDDDIEISESLQFNFNTIRDATNDFSDSNKLGQGGFGAVYRGSLSDGQEIAVKRLSKDSGQGDLEFKNEVLLVAKLQHRNLVRLLGFCLEGKERLLVYEFVPNKSLDYFIFDQTKRAQLNWESRYKIIAGIARGILYLHEDSRLRIIHRDLKASNILLDGEMSPKISDFGMARLFIVDQTHGDTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGQKNCSIGQGENIEDLLSLAWRNWRDGSATNIIDPMLNNDSRNEIMRCIHIGLLCVQENVASRPTMASVVLMLNSYSVTLSLPSEPAFYVDSRTGNLPDMSWEYNSGATRSSESTTKSAQASVDEAPITELHTR 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00023 685 Gene3D Transferase(Phosphotransferase) domain 1 430 633 - -
Gabi1193g00023 685 FunFam Cysteine-rich receptor-like protein kinase 17 322 429 - -
Gabi1193g00023 685 MobiDBLite consensus disorder prediction 257 282 - -
Gabi1193g00023 685 SMART serkin_6 354 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00023 685 CDD STKc_IRAK 360 625 - -
Gabi1193g00023 685 MobiDBLite consensus disorder prediction 652 674 - -
Gabi1193g00023 685 Gene3D - 32 138 IPR038408 -
Gabi1193g00023 685 Gene3D - 147 252 IPR038408 -
Gabi1193g00023 685 FunFam Cysteine-rich receptor-like protein kinase 10 147 252 - -
Gabi1193g00023 685 Gene3D Phosphorylase Kinase; domain 1 314 429 - -
Gabi1193g00023 685 SUPERFAMILY Protein kinase-like (PK-like) 342 642 IPR011009 -
Gabi1193g00023 685 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 31 139 - -
Gabi1193g00023 685 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Gabi1193g00023 685 ProSiteProfiles Protein kinase domain profile. 354 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00023 685 MobiDBLite consensus disorder prediction 652 685 - -
Gabi1193g00023 685 Pfam Salt stress response/antifungal 38 136 IPR002902 -
Gabi1193g00023 685 Pfam Salt stress response/antifungal 155 248 IPR002902 -
Gabi1193g00023 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Gabi1193g00023 685 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Gabi1193g00023 685 MobiDBLite consensus disorder prediction 259 275 - -
Gabi1193g00023 685 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 677 - -
Gabi1193g00023 685 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Gabi1193g00023 685 Pfam Protein tyrosine and serine/threonine kinase 357 621 IPR001245 GO:0004672|GO:0006468
Gabi1193g00023 685 FunFam cysteine-rich receptor-like protein kinase 10 430 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00023 Gabi-Chr1193 182862 195631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00023 6 643 Receptor kinase-like Gene Family AT4G21410 50.917 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00023 PK_Tyr_Ser-Thr 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00023 - - lang:109335396 866.3