Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00020 ATGGCAAGAGTTTCTTGGAGGTTGTTTACCTTTCTTTGTTGTCTCCTTTTCATGATCATATCTCAAACCAGCGCCCAGCCAAATCACTTGTGCTCCAATGATAAAGGCAACTACACAGCCAATAGCACATATCAGACCAACCTCAACACCCTTTTATCCAATCTCACTTCCAACACAGAAATCAACTATGGTTTCTACAATTTCTCATATGGCCAAGACAGTGAGAAAGTAAACGCCATTGGACTGTGCAGAGGAGATCTTAAGCCAGATGATTGTCGCAGTTGCCTCAACGATTCCAGAGGAAATCTCACACAGATTTGTCCGAACCAGAAAGAGGCAATTGTGTGGCTTGAAAAATGCATGTTGCGCTACTCCAACCGCTCAATTTTTGGCATATTGGAAACCATACCAACTATTTATGCGTGGAATGTTAACAATGCAACGGATGCGGATCAGATCAATCAAGAGCTGGTTAAATTGATAGATAATCTAAAAGGCTCAGCTGCATCAGGTGACTCTCGTCGTAAGTATGCTGCGGATGATGCACTTGCTTTAAATTTTCAACCCATATATGGTCTTGTGCAGTGTACGCCTGATTTGTCTTGGCAAAACTGCACCGACTGCTTGGATATGATTATCAAGCAAATCCGAATATGTTGCACAGACAAAATAGGAGGTAGAGTTATTGGACCCAGTTGTAATATTAGATACGAACTCACTCGCTTTTATGATCCCACGCCAATGTTAGACCCAGGTACACCGCCACCGACACCGCTGCCATCACCACCACCACCTTCGCCGTCCTCACAAGGAAAGAGCAACACATCACGAACTGCCATCGTCATAGCAGTGCCGGTTGTTGCTGTTGTTGTTTTTGTGCTCTGTTTTATCTGCATCTATTTAAGAGTGAGGAACCCAAGGAAATATTTTGAAACTGAACTTAATGATGATGAAATTATAACCAACGAGTCATTGCAAGTCAACTTTGATACCATACAAGTTGCTACAAATGACTTCTCAGATTCTAATAAACTTGGACAAGGTGGATTTGGATCTGTTTACAGGGGTAGGCTCTCTAATGAACAAGTGATTGCAGTCAAAAGGTTGTCAAGAGATTCTGGCCAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTATTGGCAAAGCTTCAGCACCGAAATTTAGTTAGACTACTTGGTTTCTGTCTGGAAGGAAGAGAAAGGCTACTTATCTATGAATTTGTTCCGAATAAAAGCCTTGATTACTTCATATTTGATCCAACCAAAAAAGCACAATTGGATTGGGAAAGGCGCTACAAAATCATTGGAGGTATTGCTCGAGGCCTTCTTTACCTTCATCAGGATTCACAACTGCGCATTATACATCGAGATCTCAAAGCGAGCAACATTCTCTTAGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGCTTAGCAAGACTGTTTGTTGTGGATCAAACAGGAGGAAGTACAAGTAGAATCGTGGGAACCTATGGATATATGGCACCAGAGTATGCAATGCATGGACAATTTTCAGTGAAATCAGACGTCTTTAGTTTTGGTGTGCTGGTTCTTGAGATTGTTAGTGGCCAAAAAAATAGCAGCATTCATCATGGGGAGAGTGTAGAGGATCTACCGAGCTTTGCATGGAGAAACTGGAGGGAGGGGACAGCTACAAATATTGTAGATCCATCATTAAACAACAATTCACGAAATGAGATGATGAGATGCATCCACATTGGTTTGCTCTGTGTTCAAGAAAATTTAGCTAACAGACCAACCATGGCTGCCGTTACACTCATGCTTAATAGCTATTCTCAGACTCTCCAGGTACCTTCCGAGCCTGCATTTTATATGGACAGTAGAACTGGAAGCCTTCCACACGTGCAATCATGGGAGTATAATTCAAGGGCAACAAGATCAACTGAATCTGCAAATGAATCAGCTCAAGAATCGGTTAATGAGGCTTCAATTACTGAGCTATACCCTCGCTAG 2016 0.4182 MARVSWRLFTFLCCLLFMIISQTSAQPNHLCSNDKGNYTANSTYQTNLNTLLSNLTSNTEINYGFYNFSYGQDSEKVNAIGLCRGDLKPDDCRSCLNDSRGNLTQICPNQKEAIVWLEKCMLRYSNRSIFGILETIPTIYAWNVNNATDADQINQELVKLIDNLKGSAASGDSRRKYAADDALALNFQPIYGLVQCTPDLSWQNCTDCLDMIIKQIRICCTDKIGGRVIGPSCNIRYELTRFYDPTPMLDPGTPPPTPLPSPPPPSPSSQGKSNTSRTAIVIAVPVVAVVVFVLCFICIYLRVRNPRKYFETELNDDEIITNESLQVNFDTIQVATNDFSDSNKLGQGGFGSVYRGRLSNEQVIAVKRLSRDSGQGDTEFKNEVLLLAKLQHRNLVRLLGFCLEGRERLLIYEFVPNKSLDYFIFDPTKKAQLDWERRYKIIGGIARGLLYLHQDSQLRIIHRDLKASNILLDEEMNPKIADFGLARLFVVDQTGGSTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGQKNSSIHHGESVEDLPSFAWRNWREGTATNIVDPSLNNNSRNEMMRCIHIGLLCVQENLANRPTMAAVTLMLNSYSQTLQVPSEPAFYMDSRTGSLPHVQSWEYNSRATRSTESANESAQESVNEASITELYPR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00020 671 ProSiteProfiles Gnk2-homologous domain profile. 135 242 IPR002902 -
Gabi1193g00020 671 MobiDBLite consensus disorder prediction 644 671 - -
Gabi1193g00020 671 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Gabi1193g00020 671 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 670 - -
Gabi1193g00020 671 FunFam Cysteine-rich receptor-like protein kinase 10 303 414 - -
Gabi1193g00020 671 Pfam Protein tyrosine and serine/threonine kinase 342 606 IPR001245 GO:0004672|GO:0006468
Gabi1193g00020 671 Gene3D Transferase(Phosphotransferase) domain 1 415 623 - -
Gabi1193g00020 671 SMART serkin_6 339 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00020 671 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Gabi1193g00020 671 Pfam Salt stress response/antifungal 146 238 IPR002902 -
Gabi1193g00020 671 CDD STKc_IRAK 345 610 - -
Gabi1193g00020 671 Gene3D - 136 242 IPR038408 -
Gabi1193g00020 671 Gene3D - 25 128 IPR038408 -
Gabi1193g00020 671 SUPERFAMILY Protein kinase-like (PK-like) 321 609 IPR011009 -
Gabi1193g00020 671 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 129 - -
Gabi1193g00020 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Gabi1193g00020 671 FunFam cysteine-rich receptor-like protein kinase 10 415 616 - -
Gabi1193g00020 671 MobiDBLite consensus disorder prediction 644 664 - -
Gabi1193g00020 671 Gene3D Phosphorylase Kinase; domain 1 303 414 - -
Gabi1193g00020 671 ProSiteProfiles Protein kinase domain profile. 339 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00020 671 MobiDBLite consensus disorder prediction 246 273 - -
Gabi1193g00020 671 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Gabi1193g00020 671 MobiDBLite consensus disorder prediction 248 269 - -
Gabi1193g00020 671 FunFam Cysteine-rich receptor-like protein kinase 10 137 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00020 Gabi-Chr1193 166930 170957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00020 7 671 Receptor kinase-like Gene Family AT4G21410 50.867 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00020 PK_Tyr_Ser-Thr 6.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00020 - - gmx:100782800 909.827