Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00017 ATGGCAATAGTTTCTCAGAGGTTGTTTTCCTTTCTTTGTTGTCTCCTTTTCGTGATCATATCTCAAACCAGCGGCCAGCCAAGTTATGTATTCCACCTCTGCACCAATGATAAAGGCAACTACACAGCCAATAGCACATATCATGCCAACCTCAACACCCTTTTATCCAATCTCACTTCCAACACAGAAATCGACTATGGTTTCTACAATTTCTCATATGGCCAAAACACTGACAAAGTAAACGCCATTGGACTGTGCAGAGGAGATCTTAAGTCAGATGCATGCCGCAGTTGCCTCAACTATTCCAGAGTCTTCAATCTAACACAGCTTTGTCCGAACCAGAAAGAGGCAATTGTGTGGTTTGACAAGTGCATGTTGCGCTACTCGAACCGCTCAATATTTGGCATCATGGAAACTTATCCTCCTTTAAATTATTTGTGGAACGATGTCAATGCAACGGATGTGGATCAGTTCAATAAAGTGCTGTTTAACTTGATGAGGAATCTAAAAGGCGCGGCTGCATCAGGTGACTCTCGTCGTAAGTATGCTGCGGATAATGCAACTGTTTCAACTTTCCAAACCATATATGGTATTGTGCAGTGCACGCCTGATTTGTCATCGCAAGGCTGCAAAGATTGCTTGGATGGGGCTATAACGCTAATCCCAGAATGTTGCAATGCCAACAGAGGTGTTACAGTCATTGGACCCAGTTGTAATGTTAGATACCAAACCTACCGCTTTTACGATCCCACGCCAATATTAGACCCAGGTACACCGGCACCGGCACCGCTGGCATCACCACCACCTTCGCCGTCCTCACAAGGAAAGAGCAACACATCACGAACTGCCATCGTCATAGCAGTGCCGGTTGTTGCTATTGTTGTTTTGGTGCTCTGTTTTATCTTCATCTATTTAAGAGCGAGGAAGCCAATGAAATATTTTGGAAGTAAGTCTGAAAAGTCATTGCAATTCAACTTTGATACCATACGAGTTGCTACAGATGACTTCTCAGATGCTAATAAACTCGGACAAGGTGGATTTGGAGCTGTTTACAGGGGTAGGCTCTCTAATGGACAAGTGATTGCAGTCAAAAGGTTGTCAAGAGATTCTGGCCAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTATTGGCCAAGCTTCAGCACCGAAATTTAGTTAGACTACTTGGTTTCTGTCTGGAAGGAAGAGAAAGGCTACTTATCTATGAATTTGTTCCGAATAAAAGCCTTGATTACTTCATATTTGATCCAACCAAGAAAGCACAATTGGATTGGGAAAGGCGCTACAAAATCATTGGAGGTATTGCTAGAGGTCTTCTTTACCTTCATCAGGATTCACAATTGCGCATTATACATCGAGATCTCAAAGCGAGCAACATTCTCTTAGATGGAGAGATGAATCCTAAGATATCAGATTTTGGCTTGGCAAGACTCTTTGTTGTGGATCAAACAGGAGGAAATACAAGTACAATCGTTGGAACCTATGGATATATGGCACCAGAGTATGCAATGCATGGACAGTTTTCAGTGAAATCAGATGTCTTTAGTTTTGGTGTACTGGTTCTTGAGATTGTTAGTGGCCAGAAAAACAGCAGCATTCATCATGGGGAGAGTGTAGAGGATTTACTGAGCTTTGCATGGAGAAACTGGAGGGAGGGGACAGCTACAAATATTGTAGATCCATCATTAAACAACAGTTCGCGAAATGAGATGATGAGATGCATCCACATTGGTTTGCTCTGTGTTCAAGAAAATTTAGCTAACAGACCAACCATGGCTGCCGTTACACTCATGCTTAATAGCTATTCTCAGACTCTCCAGGTACCTTCCGAGCCTGCATTTTATATGGACAGTAGAACTGGAAGCCTTCCACACGTGCAATCATGGGAGTATAATTCAAGGGCAACAATATCAACTGAATCTGCAAATGAATCAGCTCAAGAATCGGTTAATGAGGCTTCAATCACTGAGCCATACCCTCGCTAG 2007 0.427 MAIVSQRLFSFLCCLLFVIISQTSGQPSYVFHLCTNDKGNYTANSTYHANLNTLLSNLTSNTEIDYGFYNFSYGQNTDKVNAIGLCRGDLKSDACRSCLNYSRVFNLTQLCPNQKEAIVWFDKCMLRYSNRSIFGIMETYPPLNYLWNDVNATDVDQFNKVLFNLMRNLKGAAASGDSRRKYAADNATVSTFQTIYGIVQCTPDLSSQGCKDCLDGAITLIPECCNANRGVTVIGPSCNVRYQTYRFYDPTPILDPGTPAPAPLASPPPSPSSQGKSNTSRTAIVIAVPVVAIVVLVLCFIFIYLRARKPMKYFGSKSEKSLQFNFDTIRVATDDFSDANKLGQGGFGAVYRGRLSNGQVIAVKRLSRDSGQGDTEFKNEVLLLAKLQHRNLVRLLGFCLEGRERLLIYEFVPNKSLDYFIFDPTKKAQLDWERRYKIIGGIARGLLYLHQDSQLRIIHRDLKASNILLDGEMNPKISDFGLARLFVVDQTGGNTSTIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGQKNSSIHHGESVEDLLSFAWRNWREGTATNIVDPSLNNSSRNEMMRCIHIGLLCVQENLANRPTMAAVTLMLNSYSQTLQVPSEPAFYMDSRTGSLPHVQSWEYNSRATISTESANESAQESVNEASITEPYPR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00017 668 Gene3D - 27 132 IPR038408 -
Gabi1193g00017 668 Gene3D - 142 247 IPR038408 -
Gabi1193g00017 668 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Gabi1193g00017 668 Gene3D Transferase(Phosphotransferase) domain 1 412 620 - -
Gabi1193g00017 668 Pfam Salt stress response/antifungal 151 245 IPR002902 -
Gabi1193g00017 668 Pfam Salt stress response/antifungal 34 130 IPR002902 -
Gabi1193g00017 668 Pfam Protein kinase domain 337 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00017 668 MobiDBLite consensus disorder prediction 645 661 - -
Gabi1193g00017 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Gabi1193g00017 668 SUPERFAMILY Protein kinase-like (PK-like) 321 640 IPR011009 -
Gabi1193g00017 668 MobiDBLite consensus disorder prediction 258 277 - -
Gabi1193g00017 668 FunFam Cysteine-rich receptor-like protein kinase 10 142 247 - -
Gabi1193g00017 668 CDD STKc_IRAK 342 607 - -
Gabi1193g00017 668 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Gabi1193g00017 668 ProSiteProfiles Protein kinase domain profile. 336 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00017 668 Gene3D Phosphorylase Kinase; domain 1 304 411 - -
Gabi1193g00017 668 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 666 - -
Gabi1193g00017 668 SMART serkin_6 336 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00017 668 FunFam cysteine-rich receptor-like protein kinase 10 412 613 - -
Gabi1193g00017 668 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 133 - -
Gabi1193g00017 668 MobiDBLite consensus disorder prediction 645 668 - -
Gabi1193g00017 668 ProSiteProfiles Gnk2-homologous domain profile. 140 247 IPR002902 -
Gabi1193g00017 668 FunFam Cysteine-rich receptor-like protein kinase 10 306 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00017 Gabi-Chr1193 146911 155608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00017 8 668 Receptor kinase-like Gene Family AT4G21410 50.073 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00017 Pkinase 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00017 - - gmx:100791056 912.138