Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00015 ATGGAAGGGAACTACACACCCAATAGCACCTACCACACAAATCTCAACACACTTTTGTCCACTCTCACTTCCAACACAGAAATTGACTACGGATTCTACAATTTCTCATATGGTCAAAACAGTAACAAAGTGAACGTCATTGGGCTGTGTAGAGGAGATGTTAGGCCAGATGAGTGCCGCAGTTGCCTCGACGATTCCAGAGTCAATCTCACACAGCTTTGTCCGAATCAGAAAGAGGCAATTGTGTGGTTTGACATTTGCATGTTGCGGTACTCGAACCGCTCAATATTCGGCATCATGGAAACTTCACCTTTTTTTAATTTGTGGAACGGATACACTGCAACAGAGGTGGATAAGTTGAATCAAGTGCTCGGTAACTTGATGAGGAATTTAAAAGACAGAGCTGCATCAGGTGACTCTCGTCGTAAGTATGCTGCGGCAAATGCAACTTTTCAAAATTTATACGGTGTTGTGCAGTGCACGCCTGATTTGTCACGTCTCGACTGCAATGACTGCTTGGATGAGGTTATCTCAGAATTCCCAACTTTGTTCGATGGCCAGCTAGGTGGTAGAGTCGTTAGGCCGAGTTGTAATGGTGTTAGATATGAAACCTACGGCTTCTACGAACCTACGCCAATATCAGACACAGATGTACCACCACCAACACCACTGTCTTCACCATCCACCAATAACACTTCCTCACAAGGAAAGGGCAACATGTCACGAACTGCCATAGCCATAGTTGTGCCCACTGTTGTTGCTGTTTTTGTTTTGCTCTTTTTTATCTGCATATATTTGAGGAGGAAGGCAAAGAAAGATGTTGCAGTAATTCAAAGCATGCGTAACTCAGTCACTACTTGGAAGAAGCAAAGAGAAAAAGGGAAGTCAATAGCTACTGTGTTCTGTTTTCACAAATTTTATCTTCTGATGTTCTACTTTGATAGCACTGACGACAATATTGCGCTTTTATCACATTCGAAAAACTCACTAGTTCAAATTCGTTCCACATGTGAAATTGAAGAAGTAGAGGATGATTATAATGAAATTAAAATTGCTGAGTCGTTGCAATTCGACTTTGACACAATACGAGTTGCCACAAGTGACTTCTCTGATTCTAATAAACTCGGACAGTGCGGATTCGGAGCTGTTTACTTGGGTAGACTCTCCAATGGACAAGTGATTGCAGTCAAAAGGTTGTCAAGAGATTCTGGCCAAGGAGATACTGAATTTAAGAATGAAGTGCTTTTATTGGCCAAGCTGCAGCACCGAAATTTAGTTAGTCTACTTGGTTTCTGCCTGGAAGGAAGAGAAAGGCTGCTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTTGGAATCGGTAAGGAGAAACTGGAGGGAGGGGACAGCTACAAATATTGTAGATCCATCATTAAACAACAGTTCGGGAAATGAAATGATGAGACGCATCCACATTGGTTTACTCTGTGTTCAAGAAAATTTAGCTGACAGACCAACAATGGCTGCCGTTGCACTAATGCTTAATAGCGATTCTCTCACTCTCCAGGTACCTTCAGAACCTGCATTTTATATGGACAGTAGAACTAGAAGCCTTCCACACATGCAGTCATGGCCATAG 1620 0.4216 MEGNYTPNSTYHTNLNTLLSTLTSNTEIDYGFYNFSYGQNSNKVNVIGLCRGDVRPDECRSCLDDSRVNLTQLCPNQKEAIVWFDICMLRYSNRSIFGIMETSPFFNLWNGYTATEVDKLNQVLGNLMRNLKDRAASGDSRRKYAAANATFQNLYGVVQCTPDLSRLDCNDCLDEVISEFPTLFDGQLGGRVVRPSCNGVRYETYGFYEPTPISDTDVPPPTPLSSPSTNNTSSQGKGNMSRTAIAIVVPTVVAVFVLLFFICIYLRRKAKKDVAVIQSMRNSVTTWKKQREKGKSIATVFCFHKFYLLMFYFDSTDDNIALLSHSKNSLVQIRSTCEIEEVEDDYNEIKIAESLQFDFDTIRVATSDFSDSNKLGQCGFGAVYLGRLSNGQVIAVKRLSRDSGQGDTEFKNEVLLLAKLQHRNLVSLLGFCLEGRERLLVYEFVPNKSLDLESVRRNWREGTATNIVDPSLNNSSGNEMMRRIHIGLLCVQENLADRPTMAAVALMLNSDSLTLQVPSEPAFYMDSRTRSLPHMQSWP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00015 539 Pfam Protein tyrosine and serine/threonine kinase 372 472 IPR001245 GO:0004672|GO:0006468
Gabi1193g00015 539 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 455 528 - -
Gabi1193g00015 539 FunFam Cysteine-rich receptor-like protein kinase 10 332 444 - -
Gabi1193g00015 539 Gene3D - 1 95 IPR038408 -
Gabi1193g00015 539 Gene3D - 102 207 IPR038408 -
Gabi1193g00015 539 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 1 96 - -
Gabi1193g00015 539 Pfam Salt stress response/antifungal 3 93 IPR002902 -
Gabi1193g00015 539 Pfam Salt stress response/antifungal 118 205 IPR002902 -
Gabi1193g00015 539 Gene3D Phosphorylase Kinase; domain 1 330 444 - -
Gabi1193g00015 539 ProSiteProfiles Protein kinase domain profile. 369 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00015 539 FunFam Cysteine-rich receptor-like protein kinase 10 105 207 - -
Gabi1193g00015 539 ProSiteProfiles Gnk2-homologous domain profile. 102 207 IPR002902 -
Gabi1193g00015 539 MobiDBLite consensus disorder prediction 211 237 - -
Gabi1193g00015 539 ProSiteProfiles Gnk2-homologous domain profile. 1 96 IPR002902 -
Gabi1193g00015 539 SMART tyrkin_6 369 508 IPR020635 GO:0004713|GO:0006468
Gabi1193g00015 539 SUPERFAMILY Protein kinase-like (PK-like) 350 457 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00015 Gabi-Chr1193 110754 119509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00015 452 527 Receptor kinase-like Gene Family AT4G21410 59.211 2.59e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00015 PK_Tyr_Ser-Thr 5.7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00015 - - vra:106771832 431.409