Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00013 ATGGCAACAGTTTCTTGGAGGTTGTTTTCCTTTCTTTGTTGTCTCCTTGTCATGATCATATCTCAAACCAGCGCCCAGCCAAATCACTGGTGCTTCAATGATAAAGGCAATTACACAGCCAATAGCACATATCAGACCAACCTCAACACCCTTCTAGCCAATCTCACTGCCAACACAGAAATCGACTATGGTTTCTACAATTTCTCATATGGCCAAAACACTGACAAAGTAAACGCCATTGGACTGTGCAGAGGAGATGTTAAGCCAGATGCATGCCGCAGCTGCCTCAACGATTCCAGAGGCAATCTCACACAGATTTGTCCGAACCAGAAAGAGGCAATTGTGTGGTTTGACATGTGCATGTTGCGCTACTCGAACCGCTCAATATTTGGCATCATGGAAACTTTACCAGCTATTTATATGTGGAACATAAACAATGCAACGGATGTGGATCAGTTCAAGCAAGTGCTGTTTAACTTGATGAGGAATCTAAAAGGCGCAGCTGCATTAGGTGACTCTCGTGGTAAGTATGCTACGGATAATGTAACTGGTCCAAATTTTCAAAGCATATATGGTCTTGTGCAGTGCACGCCTGATTTGTCATGGCAAGGCTGTAATGACTGCTTGGATGGGGCTATCTCGCAAATCCCAAGTTGTTGCAATAACAGAAGAGGTGGTAGAGTTGTTGGCCCCAGTTGTAATATTAGATACGAAAGCTACCGCTTTTACGATCCCACGTCAAGATTAGACCCAAGTATACCGCCACCGACACTGACACCGCTGCCATTACCGTCCTCACAAGGAAAGAGCAACACATCACAAACTGCCATCGTCATAGCAGTGCCGGTTGTTGCTGTTGTTGTTTTGGTGCTCTGTTTCATCTGCATCTATTTAAGAGCGAAGAAGCCAAGGAAATATTTTGAAATTGATGATGATGAAATTATAACCAATGAGTCATTGCAATTCAACTTTGATACCATACGAGTTGCTACAGATGACTTCTCAGATGCTAATAAACTCGGACAAGGTGGATTTGGAGCTGTTTACAGGGGTAGGCTCTCTAATGGACAAGTGATTGCAGTCAAAAGGTTGTCAAGAGATTCTGGCCAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTATTGGCCAAGCTTCAGCACCGAAATTTAGTTAGACTACTTGGTTTCTGTCTGGAAGGAAGAGAAAGGCTACTCATCTATGAATTTGTTCCGAATAAAAGCCTTGATTACTTCATATTTGATCCAACCAAGAAAGCACAATTGGATTGGGAAAGGCGCTACAAAATCATTGGAGGTATTGCTAGAGGTCTTCTTTACCTTCATCAGGATTCACAACTGCGTATTATACATCGAGATCTCAAAGCGAGCAACATTCTCTTAGATGGAGAGATGAATTCTAAGATATCAGATTTTGGCTTGGCAAGACTTTTTGTTGTGGATCAAACAGGAGGAAATACAAATACAATCGTTGGAACCTATGGATATATGGCACCAGAGTATGCAATGCATGGACAGTTTTCAGTGAAATCAGATGTCTTTAGTTTTGGTGTACTGGTTCTTGAGATTGTTAGTGGCCAGAAAAACAGCAGCATTCATCATGGGGAGAGTGTAGAGGATCTACTGAGCTTTGCATGGAGAAACTGGAGGGAGGGGACAGCTACAAATATAGTAGATCCAACATTAAACAACAGTTCGCGAAATGAGATGATGAGATGCATCCACATTGGTTTACTCTGTGTTCAAGAAAATTTAGCTAACAGACCAACCATGGCTGCCGTTACACTCATGCTTAATAGCTATTCTCAGACTCTCCAGGTACCTTCCGAGCCTGCATTTTATATGGACAGTAGAACTGGAAGCCTTCCACACGTGCAATCATGGGAGTATAATTCAAGGGCAACAATATCAACTGAATCTGCAAATGAATCAGCTCAAGAATCGGTTAATGAGGCTTCAATTACTGAGCCATACCCTCGCTAG 2001 0.4238 MATVSWRLFSFLCCLLVMIISQTSAQPNHWCFNDKGNYTANSTYQTNLNTLLANLTANTEIDYGFYNFSYGQNTDKVNAIGLCRGDVKPDACRSCLNDSRGNLTQICPNQKEAIVWFDMCMLRYSNRSIFGIMETLPAIYMWNINNATDVDQFKQVLFNLMRNLKGAAALGDSRGKYATDNVTGPNFQSIYGLVQCTPDLSWQGCNDCLDGAISQIPSCCNNRRGGRVVGPSCNIRYESYRFYDPTSRLDPSIPPPTLTPLPLPSSQGKSNTSQTAIVIAVPVVAVVVLVLCFICIYLRAKKPRKYFEIDDDEIITNESLQFNFDTIRVATDDFSDANKLGQGGFGAVYRGRLSNGQVIAVKRLSRDSGQGDTEFKNEVLLLAKLQHRNLVRLLGFCLEGRERLLIYEFVPNKSLDYFIFDPTKKAQLDWERRYKIIGGIARGLLYLHQDSQLRIIHRDLKASNILLDGEMNSKISDFGLARLFVVDQTGGNTNTIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGQKNSSIHHGESVEDLLSFAWRNWREGTATNIVDPTLNNSSRNEMMRCIHIGLLCVQENLANRPTMAAVTLMLNSYSQTLQVPSEPAFYMDSRTGSLPHVQSWEYNSRATISTESANESAQESVNEASITEPYPR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00013 666 ProSiteProfiles Gnk2-homologous domain profile. 135 242 IPR002902 -
Gabi1193g00013 666 MobiDBLite consensus disorder prediction 643 666 - -
Gabi1193g00013 666 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Gabi1193g00013 666 Pfam Protein kinase domain 335 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00013 666 FunFam Cysteine-rich receptor-like protein kinase 17 304 409 - -
Gabi1193g00013 666 SUPERFAMILY Protein kinase-like (PK-like) 319 638 IPR011009 -
Gabi1193g00013 666 Pfam Salt stress response/antifungal 146 240 IPR002902 -
Gabi1193g00013 666 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Gabi1193g00013 666 MobiDBLite consensus disorder prediction 643 659 - -
Gabi1193g00013 666 SMART serkin_6 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00013 666 Gene3D Transferase(Phosphotransferase) domain 1 410 618 - -
Gabi1193g00013 666 ProSiteProfiles Protein kinase domain profile. 334 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00013 666 Gene3D Phosphorylase Kinase; domain 1 298 409 - -
Gabi1193g00013 666 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 664 - -
Gabi1193g00013 666 Gene3D - 26 128 IPR038408 -
Gabi1193g00013 666 Gene3D - 136 242 IPR038408 -
Gabi1193g00013 666 FunFam cysteine-rich receptor-like protein kinase 10 410 611 - -
Gabi1193g00013 666 CDD STKc_IRAK 340 605 - -
Gabi1193g00013 666 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Gabi1193g00013 666 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 129 - -
Gabi1193g00013 666 FunFam Cysteine-rich receptor-like protein kinase 10 137 242 - -
Gabi1193g00013 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00013 Gabi-Chr1193 104458 107854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00013 7 666 Receptor kinase-like Gene Family AT4G21410 49.422 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00013 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00013 - - gmx:100782800 936.791