Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00011 ATGGCAACAGTTTCTTGGAGGTTGTTTTCCTTTCTTTGTTGTCTCCTTGTCATGATCATATCTCAAACCAGCGCCCAGCCAAATCACTGGTGCTTCAATGATAAAGGCAATTACACAGCCAATAGCACATATCAGACCAACCTCAACACCCTTCTAGCCAATCTCACTGCCAACACAGAAATCGACTATGGTTTCTACAATTTCTCATATGGCCAAAACACTGACAAAGTAAACGCCATTGGACTGTGCAGAGGAGATGTTAAGCCAGATGCATGCCGCAGCTGCCTCAACGATTCCAGAGGCAATCTCACACAGATTTGTCCGAACCAGAAAGAGGCAATTGTGTGGTTTGACATGTGCATGTTGCGCTACTCGAACCGCTCAATATTTGGCATCATGGAAACTTTACCAGCTATTTATATGTGGAACATAAACAATGCAACGGATGTGGATCAGTTCAAGCAAGTGCTGTTTAACTTGATGAGGAATCTAAAAGGCGCAGCTGCATTAGGTGACTCTCGTGGTAAGTATGCTACGGATAATGTAACTGGTCCAAATTTTCAAAGCATATATGGTCTTGTGCAGTGCACGCCTGATTTGTCATGGCAAGGCTGTAATGACTGCTTGGATGGGGCTATCTCGCAAATCCCAAGTTGTTGCAATAACAGAAGAGGTGGTAGAGTTGTTGGCCCCAGTTGTAATATTAGATACGAAAGCTACCGCTTTTACGATCCCACGTCAAGATTAGACCCAAGTATACCGCCACCGACACTGACACCGCTGCCATTACCGTCCTCACAAGGTAAAACTGCCATCGTCATAGCAGTGCCGGTTGTTGCTGTTGTTGTTTTGGTGCTCTGTTTCATCTGCATCTATTTAAGAGCGAAGAAGCCAAGGAAATATTTTGAAAGTAAGGACGGGACTGAAGTTGATGATGATGAAATTATAACCAATGAGTCATTGCAATTCAACTTTGATACCATACGAGTTGCTACAGATGACTTCTCAGATGCTAATAAACTCGGACAAGGTGGATTTGGAGCTGTTTACAGGGGTAGGCTCTCTAATGGACAAGTGATTGCAGTCAAAAGGTTGTCAAGAGATTCTGGCCAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTATTGGCCAAGCTTCAGCACCGAAATTTAGTTAGACTACTTGGTTTCTGTCTGGAAGGAAGAGAAAGGCTACTCATCTATGAATTTGTTCCGAATAAAAGCCTTGATTACTTCATATTTGATCCAACCAAGAAAGCACAATTGGATTGGGAAAGGCGCTACAAAATCATTGGAGGTATTGCTAGAGGTCTTCTTTACCTTCATCAGGATTCACAACTGCGTATTATACATCGAGATCTCAAAGCGAGCAACATTCTCTTAGATGGAGAGATGAATTCTAAGATATCAGATTTTGGCTTGGCAAGACTTTTTGTTGTGGATCAAACAGGAGGAAATACAAATACAATCGTTGGAACCTATGGATATATGGCACCAGAGTATGCAATGCATGGACAGTTTTCAGTGAAATCAGATGTCTTTAGTTTTGGTGTACTGGTTCTTGAGATTGTTAGTGGCCAGAAAAACAGCAGCATTCATCATGGGGAGAGTGTAGAGGATCTACTGAGCTTTGCATGGAGAAACTGGAGGGAGGGGACAGCTACAAATATAGTAGATCCAACATTAAACAACAGTTCGCGAAATGAGATGATGAGATGCATCCACATTGGTTTACTCTGTGTTCAAGAAAATTTAGCTAACAGACCAACCATGGCTGCCGTTACACTCATGCTTAATAGCTATTCTCAGACTCTCCAGGTACCTTCCGAGCCTGCATTTTATATGGACAGTAGAACTGGAAGCCTTCCACACGTGCAATCATGGGAGTATAATTCAAGGGCAACAATATCAACTGAATCTGCAAATGAATCAGCTCAAGAATCGGTTAATGAGGCTTCAATTACTGAGCCATACCCTCGCTAG 2004 0.4247 MATVSWRLFSFLCCLLVMIISQTSAQPNHWCFNDKGNYTANSTYQTNLNTLLANLTANTEIDYGFYNFSYGQNTDKVNAIGLCRGDVKPDACRSCLNDSRGNLTQICPNQKEAIVWFDMCMLRYSNRSIFGIMETLPAIYMWNINNATDVDQFKQVLFNLMRNLKGAAALGDSRGKYATDNVTGPNFQSIYGLVQCTPDLSWQGCNDCLDGAISQIPSCCNNRRGGRVVGPSCNIRYESYRFYDPTSRLDPSIPPPTLTPLPLPSSQGKTAIVIAVPVVAVVVLVLCFICIYLRAKKPRKYFESKDGTEVDDDEIITNESLQFNFDTIRVATDDFSDANKLGQGGFGAVYRGRLSNGQVIAVKRLSRDSGQGDTEFKNEVLLLAKLQHRNLVRLLGFCLEGRERLLIYEFVPNKSLDYFIFDPTKKAQLDWERRYKIIGGIARGLLYLHQDSQLRIIHRDLKASNILLDGEMNSKISDFGLARLFVVDQTGGNTNTIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGQKNSSIHHGESVEDLLSFAWRNWREGTATNIVDPTLNNSSRNEMMRCIHIGLLCVQENLANRPTMAAVTLMLNSYSQTLQVPSEPAFYMDSRTGSLPHVQSWEYNSRATISTESANESAQESVNEASITEPYPR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00011 667 ProSiteProfiles Gnk2-homologous domain profile. 135 242 IPR002902 -
Gabi1193g00011 667 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Gabi1193g00011 667 ProSiteProfiles Protein kinase domain profile. 335 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00011 667 FunFam Cysteine-rich receptor-like protein kinase 17 302 410 - -
Gabi1193g00011 667 SUPERFAMILY Protein kinase-like (PK-like) 320 639 IPR011009 -
Gabi1193g00011 667 SMART serkin_6 335 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00011 667 Gene3D - 26 128 IPR038408 -
Gabi1193g00011 667 Gene3D - 136 242 IPR038408 -
Gabi1193g00011 667 MobiDBLite consensus disorder prediction 644 660 - -
Gabi1193g00011 667 Pfam Salt stress response/antifungal 146 240 IPR002902 -
Gabi1193g00011 667 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Gabi1193g00011 667 MobiDBLite consensus disorder prediction 644 667 - -
Gabi1193g00011 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Gabi1193g00011 667 CDD STKc_IRAK 341 606 - -
Gabi1193g00011 667 FunFam cysteine-rich receptor-like protein kinase 10 411 612 - -
Gabi1193g00011 667 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Gabi1193g00011 667 Pfam Protein kinase domain 336 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00011 667 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 665 - -
Gabi1193g00011 667 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 129 - -
Gabi1193g00011 667 Gene3D Phosphorylase Kinase; domain 1 298 410 - -
Gabi1193g00011 667 Gene3D Transferase(Phosphotransferase) domain 1 411 619 - -
Gabi1193g00011 667 FunFam Cysteine-rich receptor-like protein kinase 10 137 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00011 Gabi-Chr1193 104458 107854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00011 7 667 Receptor kinase-like Gene Family AT4G21410 49.422 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00011 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00011 - - gmx:100782800 938.717