Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00009 ATGGCAACAGTTTCTTGGAGGTTGTTTTCCTTTCTTTGTTGTCTCCTTGTCATGATCATATCTCAAACCAGCGCCCAGCCAAATCACTGGTGCTTCAATGATAAAGGCAATTACACAGCCAATAGCACATATCAGACCAACCTCAACACCCTTCTAGCCAATCTCACTGCCAACACAGAAATCGACTATGGTTTCTACAATTTCTCATATGGCCAAAACACTGACAAAGTAAACGCCATTGGACTGTGCAGAGGAGATGTTAAGCCAGATGCATGCCGCAGCTGCCTCAACGATTCCAGAGGCAATCTCACACAGATTTGTCCGAACCAGAAAGAGGCAATTGTGTGGTTTGACATGTGCATGTTGCGCTACTCGAACCGCTCAATATTTGGCATCATGGAAACTTTACCAGCTATTTATATGTGGAACATAAACAATGCAACGGATGTGGATCAGTTCAAGCAAGTGCTGTTTAACTTGATGAGGAATCTAAAAGGCGCAGCTGCATTAGGTGACTCTCGTGGTAAGTATGCTACGGATAATGTAACTGGTCCAAATTTTCAAAGCATATATGGTCTTGTGCAGTGCACGCCTGATTTGTCATGGCAAGGCTGTAATGACTGCTTGGATGGGGCTATCTCGCAAATCCCAAGTTGTTGCAATAACAGAAGAGGTGGTAGAGTTGTTGGCCCCAGTTGTAATATTAGATACGAAAGCTACCGCTTTTACGATCCCACGTCAAGATTAGACCCAAGTATACCGCCACCGACACTGACACCGCTGCCATTACCGTCCTCACAAGGTAATTTTCATGTTGGGCTTAGAAAGAGCAACACATCACAAACTGCCATCGTCATAGCAGTGCCGGTTGTTGCTGTTGTTGTTTTGGTGCTCTGTTTCATCTGCATCTATTTAAGAGCGAAGAAGCCAAGGAAATATTTTGAAAAGTCATTGCAATTCAACTTTGATACCATACGAGTTGCTACAGATGACTTCTCAGATGCTAATAAACTCGGACAAGGTGGATTTGGAGCTGTTTACAGGGGTAGGCTCTCTAATGGACAAGTGATTGCAGTCAAAAGGTTGTCAAGAGATTCTGGCCAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTATTGGCCAAGCTTCAGCACCGAAATTTAGTTAGACTACTTGGTTTCTGTCTGGAAGGAAGAGAAAGGCTACTCATCTATGAATTTGTTCCGAATAAAAGCCTTGATTACTTCATATTTGATCCAACCAAGAAAGCACAATTGGATTGGGAAAGGCGCTACAAAATCATTGGAGGTATTGCTAGAGGTCTTCTTTACCTTCATCAGGATTCACAACTGCGTATTATACATCGAGATCTCAAAGCGAGCAACATTCTCTTAGATGGAGAGATGAATTCTAAGATATCAGATTTTGGCTTGGCAAGACTTTTTGTTGTGGATCAAACAGGAGGAAATACAAATACAATCGTTGGAACCTATGGATATATGGCACCAGAGTATGCAATGCATGGACAGTTTTCAGTGAAATCAGATGTCTTTAGTTTTGGTGTACTGGTTCTTGAGATTGTTAGTGGCCAGAAAAACAGCAGCATTCATCATGGGGAGAGTGTAGAGGATCTACTGAGCTTTGCATGGAGAAACTGGAGGGAGGGGACAGCTACAAATATAGTAGATCCAACATTAAACAACAGTTCGCGAAATGAGATGATGAGATGCATCCACATTGGTTTACTCTGTGTTCAAGAAAATTTAGCTAACAGACCAACCATGGCTGCCGTTACACTCATGCTTAATAGCTATTCTCAGACTCTCCAGGTACCTTCCGAGCCTGCATTTTATATGGACAGTAGAACTGGAAGCCTTCCACACGTGCAATCATGGGAGTATAATTCAAGGGCAACAATATCAACTGAATCTGCAAATGAATCAGCTCAAGAATCGGTTAATGAGGCTTCAATTACTGAGCCATACCCTCGCTAG 1995 0.4251 MATVSWRLFSFLCCLLVMIISQTSAQPNHWCFNDKGNYTANSTYQTNLNTLLANLTANTEIDYGFYNFSYGQNTDKVNAIGLCRGDVKPDACRSCLNDSRGNLTQICPNQKEAIVWFDMCMLRYSNRSIFGIMETLPAIYMWNINNATDVDQFKQVLFNLMRNLKGAAALGDSRGKYATDNVTGPNFQSIYGLVQCTPDLSWQGCNDCLDGAISQIPSCCNNRRGGRVVGPSCNIRYESYRFYDPTSRLDPSIPPPTLTPLPLPSSQGNFHVGLRKSNTSQTAIVIAVPVVAVVVLVLCFICIYLRAKKPRKYFEKSLQFNFDTIRVATDDFSDANKLGQGGFGAVYRGRLSNGQVIAVKRLSRDSGQGDTEFKNEVLLLAKLQHRNLVRLLGFCLEGRERLLIYEFVPNKSLDYFIFDPTKKAQLDWERRYKIIGGIARGLLYLHQDSQLRIIHRDLKASNILLDGEMNSKISDFGLARLFVVDQTGGNTNTIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGQKNSSIHHGESVEDLLSFAWRNWREGTATNIVDPTLNNSSRNEMMRCIHIGLLCVQENLANRPTMAAVTLMLNSYSQTLQVPSEPAFYMDSRTGSLPHVQSWEYNSRATISTESANESAQESVNEASITEPYPR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00009 664 FunFam cysteine-rich receptor-like protein kinase 10 408 609 - -
Gabi1193g00009 664 SUPERFAMILY Protein kinase-like (PK-like) 315 636 IPR011009 -
Gabi1193g00009 664 ProSiteProfiles Gnk2-homologous domain profile. 135 242 IPR002902 -
Gabi1193g00009 664 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Gabi1193g00009 664 Gene3D - 26 128 IPR038408 -
Gabi1193g00009 664 Gene3D - 136 242 IPR038408 -
Gabi1193g00009 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Gabi1193g00009 664 FunFam Cysteine-rich receptor-like protein kinase 10 305 407 - -
Gabi1193g00009 664 Pfam Salt stress response/antifungal 146 240 IPR002902 -
Gabi1193g00009 664 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Gabi1193g00009 664 ProSiteProfiles Protein kinase domain profile. 332 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00009 664 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Gabi1193g00009 664 MobiDBLite consensus disorder prediction 641 664 - -
Gabi1193g00009 664 CDD STKc_IRAK 338 603 - -
Gabi1193g00009 664 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 662 - -
Gabi1193g00009 664 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 129 - -
Gabi1193g00009 664 Gene3D Transferase(Phosphotransferase) domain 1 408 616 - -
Gabi1193g00009 664 SMART serkin_6 332 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00009 664 MobiDBLite consensus disorder prediction 641 657 - -
Gabi1193g00009 664 Pfam Protein kinase domain 333 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00009 664 Gene3D Phosphorylase Kinase; domain 1 304 407 - -
Gabi1193g00009 664 FunFam Cysteine-rich receptor-like protein kinase 10 137 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00009 Gabi-Chr1193 104458 107854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00009 7 664 Receptor kinase-like Gene Family AT4G21410 48.844 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00009 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00009 - - gmx:100782800 924.465