Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00006 ATGGCAACAGTTTCTTGCAGGTTGTTTTCCTTTCTTTGTTGTCTCCTTTTCATGATCATATCTCAAACCAGCGCCCAGTCAAGTCCTCTATCTCGCATCTGCGTCAATGAGAAAGGCAACTACACAGCCAATAGCACATATCAGACCAACCTCAACACCCTTTTACCCAATCTCACTTCCAACACAGAAATCGACTATGGTTTCTACAATTTCTCATATGGCCAAAACATTGACAAAGTAAACGCCATTGGACTGTGCAGAGGAGATGTTAAACCAGATGCATGCCGCAGTTGCCTCAACGATTCCAGAGTCAGTCTCACACAGCTTTGTCCGAACCAGAAAGAGGCATATGTGTGGTTTGACAAGTGCATGTTGCGCTACTCGAACCGCTCAATATTTGGCGTCGTGGAAACTTTACTTCCTTTAGATTATATGTGGGACTTAAACAATGCAACGGATGTGGATCAGTTCAATCAAGTGCTGTTTAACTTGATGAGGAATCTAAAAGGCGCAGCTGCATCAGGTGACTCTCGTCGTAAGTATGCTGCGGATAATGCAACTGTTTCAACTTTTCAAACCATATATGGTCTTGTGCAGTGCACGCCTGATTTGTCATGGGAAGCCTGCAATGGCTGCTTGGATGGGGCTATCTCGGAAATCCCAAAGTGTTGCAATGCTAGAAGTGGTGTTAGAGTTATTGCACCCAGTTGTAATATTAGATACGAAACCTATGGCTTTTACGATCCCACACCTTCACCGTCCTCACAAGGTAATTGTCATGTTAGCAACACATCACGAACTGCCATCGTCATAGCTGTGCCGGTTGTTGGTGTTGTTGTTTTGGTCCTAAGTTTTATCTGCATCTATTTAAGAATGAGGAAGCCAAGGAAATATTTTGAAATTAATGATGATGAAATTATAACCAATGAGTCATTGCAATTCAACTTTGATACCATACGAGTTGCTACAAACGACTTCTCAGATTCTAACAAACTTGGACAAGGTGGATTTGGAGCTGTTTACAGGGGTAGGTTCTCTAATGGACAAGTGATTGCTGTCAAAAGGTTGTCAAGAGATTCCGGCCAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTATTGGCAAAGCTTCAGCACCGAAATTTAGTTAGACTACTTGGTTACTGTCTGGAAGGAAGAGAAAGGCTACTTACCTATGAATTTGTTCCAAATAAAAGCCTTGATTACTTCATATTTGATCCAACCAAGAAAGCACAATTGAATTGGGAAAGGCGCTACAAAATCATTGTAGGCATTGCTCGAGGTCTTCTTTACCTTCATCAAGATTCACAACTACGCATTATACATCGAGATCTCAAAGCTAGCAACATTCTCTTAGATGAAGAGATGAATCCTAAGATATCAGATTTTGGCTTGGCAAGACTGTTTGTTGTGGATCAAACAGGAGGAAGTACAAGTAGAATCGTTGGAACTTATGGATATATGGCACCAGAGTATGCAATGCATGGACAATTTTCAGTGAAATCAGATGTTTTTAGTTTTGGTGTACTGACTCTTGAGATTGTTAGTGGCCAGAAAAATAGCAGCCTTCACAACGGGGAGAGGGTAGAGGATCTACTGAGCTTTGCATGGAGAAACTGGAGGGAGGGGACCGCTACAAATATTGTAGATCCATCATTAAACAACAGTTCGGAAAATGAGATGATGAGATGCATCCACATTGGTTTACTCTGTGTTCAAGAAAATTTAGCTAACAGACCAACCATGGCTGCTGTTACACTCATACTTAATAGCTATTATCAGACTCTCCCGGTACCTTCCGAACCTGCATTTTATATGGACAGTAGAACTGGAAGCCTTCCACACGTGCAATCTTGGGAGTATAATTCAAGGGCAACAATATCAACTGAATCTGCAAATGAATCAGCTCAAGAATTGGTTAATGAGGCTTCAATTACTGAGCTAGACCCTCGATAG 1977 0.4148 MATVSCRLFSFLCCLLFMIISQTSAQSSPLSRICVNEKGNYTANSTYQTNLNTLLPNLTSNTEIDYGFYNFSYGQNIDKVNAIGLCRGDVKPDACRSCLNDSRVSLTQLCPNQKEAYVWFDKCMLRYSNRSIFGVVETLLPLDYMWDLNNATDVDQFNQVLFNLMRNLKGAAASGDSRRKYAADNATVSTFQTIYGLVQCTPDLSWEACNGCLDGAISEIPKCCNARSGVRVIAPSCNIRYETYGFYDPTPSPSSQGNCHVSNTSRTAIVIAVPVVGVVVLVLSFICIYLRMRKPRKYFEINDDEIITNESLQFNFDTIRVATNDFSDSNKLGQGGFGAVYRGRFSNGQVIAVKRLSRDSGQGDTEFKNEVLLLAKLQHRNLVRLLGYCLEGRERLLTYEFVPNKSLDYFIFDPTKKAQLNWERRYKIIVGIARGLLYLHQDSQLRIIHRDLKASNILLDEEMNPKISDFGLARLFVVDQTGGSTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLTLEIVSGQKNSSLHNGERVEDLLSFAWRNWREGTATNIVDPSLNNSSENEMMRCIHIGLLCVQENLANRPTMAAVTLILNSYYQTLPVPSEPAFYMDSRTGSLPHVQSWEYNSRATISTESANESAQELVNEASITELDPR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00006 658 FunFam Cysteine-rich receptor-like protein kinase 10 291 401 - -
Gabi1193g00006 658 ProSiteProfiles Protein kinase domain profile. 326 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00006 658 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 132 - -
Gabi1193g00006 658 SMART serkin_6 326 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00006 658 CDD STKc_IRAK 332 592 - -
Gabi1193g00006 658 ProSiteProfiles Gnk2-homologous domain profile. 139 246 IPR002902 -
Gabi1193g00006 658 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 658 - -
Gabi1193g00006 658 Gene3D Phosphorylase Kinase; domain 1 290 401 - -
Gabi1193g00006 658 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Gabi1193g00006 658 Gene3D Transferase(Phosphotransferase) domain 1 402 605 - -
Gabi1193g00006 658 SUPERFAMILY Protein kinase-like (PK-like) 311 630 IPR011009 -
Gabi1193g00006 658 Pfam Protein tyrosine and serine/threonine kinase 329 592 IPR001245 GO:0004672|GO:0006468
Gabi1193g00006 658 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Gabi1193g00006 658 Pfam Salt stress response/antifungal 150 244 IPR002902 -
Gabi1193g00006 658 MobiDBLite consensus disorder prediction 637 658 - -
Gabi1193g00006 658 Gene3D - 141 246 IPR038408 -
Gabi1193g00006 658 Gene3D - 28 131 IPR038408 -
Gabi1193g00006 658 FunFam Cysteine-rich receptor-like protein kinase 10 142 246 - -
Gabi1193g00006 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Gabi1193g00006 658 FunFam cysteine-rich receptor-like protein kinase 10 402 603 - -
Gabi1193g00006 658 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00006 Gabi-Chr1193 81858 85895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00006 7 658 Receptor kinase-like Gene Family AT4G21410 49.059 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00006 PK_Tyr_Ser-Thr 9.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00006 - - gmx:100791056 931.398