Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00005 ATGGCACCTTCAAAAGTGATTTCTCTTCTCTGTCTCCTTGTTATACTCATATCTCATACCACCGCCCAGCCAAACTTCCTTTACTATTTTTGCATATATGATAAAGGCAACTACACTGAAAATAGTACCTACCAGACCAACCTCAATGCTCTTTTGTCCAGTTTATCTTCCAACACACAAATTGATTATGGCTTCTACAATTCCTCTGAGGGTCAAAACTCTGACAAAGTAAATGCAATTGGGATGTGTAGAGGAGATATTAAGCCAGATGTATGCCGCAGTTGCCTCAATGATTCAAGAGTCCTTCTCACACAGCTTTGTCCAAACCAGAAAGAGGCCATTGGTTGGTATGACAATTGCATGCTGCGCTACTCAAACCGTTCAATATTTGGTATTATGGAACCTGATCCTGCGTACACTCTGTGGGTCCAAAATAATGCAACTGATATGGATCAGTTTAATCAAAAGCTTATGGACTTGGTGGATAGCCTGAGAAGCAAAGCTGCATCCGGTGATTCCCTTAAAAAGTATGCTGCAGGAAGCGCAATAGGTCCAAGCTTTCAAACTATATTTTCTCTACTACAATGCACACCTGATTTATCAGAGCAACAGTGCAATGATTGCTTGGTTAGAACTATCTCAGAAATCTCAACTTGTTGTGCTGGCAAGACTGCTGGCAGAATTGGAAGACCAAGCTGCAATCTTAGATTTGATACATCTCCCTTCTATGACTCTACAGCCGATGCCTCTCCACCACAAGTGCCTCCTGCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTTCAGTCACCAATACCACTTCCACAGGAGGAAAGAGCAACACAACTCGAACTGTCATTGCGGTAGTTGTGCCAATTGTAGCTGTCGTTGCACTCCTCATCTCTCTCTGCATCTTCTTAAAAGCAAGAAAGAAAAGGAAAAATATTGGCATGGACACTGAAGTTGACAATGAAATTGAACCTACTGAGACATTGCAATTCAACTTTAACACCATAAGAATAGCTACAAATAACTTTTCTGAGACAAATATGCTAGGGCGAGGAGGATTTGGACCTGTTTACAAGGGTAAGCTTTCCAATGGACAAGAAGTTGCTGTTAAAAGGTTGTCAATGAATTCAGGTCAAGGAGATACAGAATTTAAGAATGAAGTGCAGTTAGTGGCCAAGCTACAACACCGAAATTTAGTCAGGCTACTTGGTTTCAGTTTGGAAAGAAATGAAAGGCTACTGATCTATGAGTTTGTTCCCAATAAAAGCCTTGATTACTTCATATTTGATCCAATTAAGCGTGCACATTTAGATTGGGAAAGGCGGTATAAAATCATAGGAGGCATTGCCAGAGGCCTTCTTTACCTTCATGAGGATTCGAGACTGCGAATTATTCATCGTGATCTCAAAGCAAGCAACATTCTCTTAGATGAAGAGATGAACCCCAAGATATCAGATTTTGGCATGGCAAGATTGTTTGTTGTGGATCAAACTCAAGGAAATACAAGTAGAATTGTTGGAACTTATGGATATATGGCACCTGAGTATGTAAGGCAAGGACAATTCTCTGTGAAGTCAGATGTTTTCAGTTTTGGCGTACTGGTTCTAGAGATAGTAACTGGCCAGAAAAATAGTGGCTTTCGTAATGGAGAGGATGTAGAGGATCTTATAAGCTTTGCTTGGAAAAATTGGAGGAAAGGAACAGCTTCTAATATTATAGATCCCACCTTAAATGATGCTCTAAGAAATGAAATAATAAGATGCATTCACATTGGGTTACTTTGTGTTCAAGAAAGGGTTGCTAATAGACCAAAATTGGCTTCAGTCGTGCTTATGCTTGATAGCTACTCTTCCTCTCTCCCAGTTCCCTTGCAACCTGCCTTTTGTATGGAAGATACATGTTTATCAGACATCCAAATTTCGGTTTGCAGTTCTGTTGCAACGGGATCAAGTGAACAGGAAAGTAAATGTGTTGAAGCATCAACAAATGAGGCCTCAATTAGTAGTCTATATCCTCGTTAG 2028 0.4068 MAPSKVISLLCLLVILISHTTAQPNFLYYFCIYDKGNYTENSTYQTNLNALLSSLSSNTQIDYGFYNSSEGQNSDKVNAIGMCRGDIKPDVCRSCLNDSRVLLTQLCPNQKEAIGWYDNCMLRYSNRSIFGIMEPDPAYTLWVQNNATDMDQFNQKLMDLVDSLRSKAASGDSLKKYAAGSAIGPSFQTIFSLLQCTPDLSEQQCNDCLVRTISEISTCCAGKTAGRIGRPSCNLRFDTSPFYDSTADASPPQVPPAPPPSPPPPPPSVTNTTSTGGKSNTTRTVIAVVVPIVAVVALLISLCIFLKARKKRKNIGMDTEVDNEIEPTETLQFNFNTIRIATNNFSETNMLGRGGFGPVYKGKLSNGQEVAVKRLSMNSGQGDTEFKNEVQLVAKLQHRNLVRLLGFSLERNERLLIYEFVPNKSLDYFIFDPIKRAHLDWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKISDFGMARLFVVDQTQGNTSRIVGTYGYMAPEYVRQGQFSVKSDVFSFGVLVLEIVTGQKNSGFRNGEDVEDLISFAWKNWRKGTASNIIDPTLNDALRNEIIRCIHIGLLCVQERVANRPKLASVVLMLDSYSSSLPVPLQPAFCMEDTCLSDIQISVCSSVATGSSEQESKCVEASTNEASISSLYPR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00005 675 Gene3D Phosphorylase Kinase; domain 1 306 420 - -
Gabi1193g00005 675 SMART serkin_6 345 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00005 675 MobiDBLite consensus disorder prediction 251 270 - -
Gabi1193g00005 675 SUPERFAMILY Protein kinase-like (PK-like) 330 640 IPR011009 -
Gabi1193g00005 675 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 672 - -
Gabi1193g00005 675 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 129 - -
Gabi1193g00005 675 CDD STKc_IRAK 351 616 - -
Gabi1193g00005 675 ProSiteProfiles Protein kinase domain profile. 345 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00005 675 FunFam cysteine-rich receptor-like protein kinase 10 421 622 - -
Gabi1193g00005 675 FunFam Cysteine-rich receptor-like protein kinase 10 137 242 - -
Gabi1193g00005 675 ProSiteProfiles Gnk2-homologous domain profile. 135 242 IPR002902 -
Gabi1193g00005 675 Gene3D Transferase(Phosphotransferase) domain 1 421 623 - -
Gabi1193g00005 675 Gene3D - 136 242 IPR038408 -
Gabi1193g00005 675 Gene3D - 24 128 IPR038408 -
Gabi1193g00005 675 FunFam Cysteine-rich receptor-like protein kinase 10 307 420 - -
Gabi1193g00005 675 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Gabi1193g00005 675 Pfam Protein kinase domain 346 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00005 675 MobiDBLite consensus disorder prediction 244 278 - -
Gabi1193g00005 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Gabi1193g00005 675 Pfam Salt stress response/antifungal 35 126 IPR002902 -
Gabi1193g00005 675 Pfam Salt stress response/antifungal 146 239 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00005 Gabi-Chr1193 38399 65120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00005 1 675 Receptor kinase-like Gene Family AT4G21410 50.504 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00005 Pkinase 8.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00005 - - gmx:102662291 1014.22