Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1193g00004 ATGGTATTCGGAGCTGTTTACTTGGGTAGACTCTCCAATGGACAAGTGATTGCAGTCAAAAGAGAAAGGCTACTTGTCTATGAATTTGTTAATAAAAGCCTTGATTTCTTCATATTTGATCCAACCAAGAAAGTGCAACTGGATTGGAAAAGGCGCTACAAAATCATTCGGGGTATAGCTCGTGGCCTTCTTTACCTTCATGAGGATTCTCGACTGCGCATTATACATCGTGATCTCAAAGCAAGCAACATTCTTTTAGATGAAGAAATGAATCCTAAGATATCAGATTTTGGCATAGCAAGACTGTTTGTGGTGGATCAAACTCAAGGCAATACCAGTAGAATTGTTGGAACATATGGTTATATGTCTCCAAAATATATAAAGTATGGGCAATTTTCAGAAAAGTCTGATGTCTTTAGCTTTGGAGTCATAGTTTTGGAGGTCATTACTGCTAAAAGGAATGCCCATCCTCTTGTATCATCAGATGATGATAGCCTCCAAGCTTATGTTTGGAGACAATGGAGAGATCAAACACCTTTAAATATATTACATGAAGGTATTAAAGAATCTTGCAATCATAGTGAAGTCATTAAATGCATCCATATTGGTTTATTATGTGTGCAAGAGAAGCCAGATCATAGACCCACAATGGCAAGAGTTGTTTCATATCTATGTAGCCCGTTAGTTGAGTTGCCATCTCCCGGAGAACCAGTGAATTCTATGCATAATAATGGAATAGTGCAAAAGCTGGTAGCAGACGAATCGAGTTCAGGTTCCACTTTCTCAGTCAAAGAAATGTCCTTGAGTAAATTTATTCCTCGGTAG 825 0.3818 MVFGAVYLGRLSNGQVIAVKRERLLVYEFVNKSLDFFIFDPTKKVQLDWKRRYKIIRGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKISDFGIARLFVVDQTQGNTSRIVGTYGYMSPKYIKYGQFSEKSDVFSFGVIVLEVITAKRNAHPLVSSDDDSLQAYVWRQWRDQTPLNILHEGIKESCNHSEVIKCIHIGLLCVQEKPDHRPTMARVVSYLCSPLVELPSPGEPVNSMHNNGIVQKLVADESSSGSTFSVKEMSLSKFIPR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1193g00004 274 FunFam cysteine-rich receptor-like protein kinase 10 29 231 - -
Gabi1193g00004 274 SUPERFAMILY Protein kinase-like (PK-like) 3 249 IPR011009 -
Gabi1193g00004 274 Gene3D Transferase(Phosphotransferase) domain 1 30 230 - -
Gabi1193g00004 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Gabi1193g00004 274 SMART serkin_6 3 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00004 274 Pfam Protein kinase domain 18 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1193g00004 274 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 267 - -
Gabi1193g00004 274 ProSiteProfiles Protein kinase domain profile. 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1193g00004 Gabi-Chr1193 9312 23350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1193g00004 3 274 Receptor kinase-like Gene Family AT4G23150 49.201 2.78e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1193g00004 Pkinase 1.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1193g00004 - - var:108324781 346.28