Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1190g00004 ATGCCTTCATGGTGGGGGAGATCATCATCAAAAGAAACCAAGAAGAAAGCAAGTAAGGAAAGTTTTATCGACACATTACACCGAAAATTTAAAATCCCATCTGAAGGTAAACTAAGCAGTAGATCAGGAGAGTCTCGTAGACATCGCAATGACGCTATTTCAGAGAAAGGGGCCCAGTCTCGTTCTGAATCAACATCCCCATCGCATTCCAAAGTGGCAAGGTGTCAAAGTTTTGCTGAAAGGCCTCATGCTCAGCCACTACCTCTTCCTGGCCTGCACCCATCAAATGTAAGCCGAGCAGATTCTGAAATTAGCTTATCGACTAAATCAAGAGTGGAAAAGGGCTCCAAACCATCATTGTTTCTGCCGCTACCAAAACCTGGATGCATGCGTGGTAGGTTGAATCCTGCAGATTTGGATGGAGATCTGGTCACTGCTTCAGTCTCTAGTGAGAGCTCTGCTGACAGTGATGAACCAGTGGACTCCAACAATCGTAGTCCTCTGGCAACTGACTCCGAGACTGGGACAAGAACTGCTGCAGGCAGTCCTTCCAGCTTGGTGCTCAAGGATCAATCATATGCTGTTTCCCAAGTAAATTCAAGAGAAGCCAAAAAGCCAGTAAACCTTCTGGGGAATCATATGTCTTCTACTTCTCCAAAACGGAGGCCTTTAAGCAACCATGTTCCAGATCTGCAGATTCCTCCTCGCGGTGCCTTCTGTAGTGCTCCTGACAGTTCCATGTCAAGTCCATCAAGAAGTCCGTTGAGAGCATTTGGCACAGAACAGGTGTTGAACTCTGCTTTTTGGGCTGGAAAGCCATATTCAGAGGTCAATTTAGTTGGATCCGGGCACTGCTCAAGTCCAGGTTCCGGTCACAATTCTGGGCATAATTCAATGGGCGGGGACATGTCAGGACAGTTGTTTTGGCAACCAAGCAGGGGTAGTCCTGAGTATTCTCCTGTACTGAGTCCCAGAATGACAAGCCCTGGTCCAAGTTCTAGAATTCAGAGTGGAGCTGTTACACCTATTCATCCCAGAGCTGGGGGAGCACCCACTGAATCACAGACAGGACGGGTTGATGATGGAAAACAACAAAGTCATCGTTTGCCCCTTCCTCCTTTAGCAGTTACCAACTCCATGCCTTTCTCTCATTCAAATTCTGCAGCAACATCTCCATCTATGCCAAGAAGTCCAGGAAGAGCAGATAATCCATTGAGCCCTCCGTTGAGCCCTGGCTCACGTTGGAAAAAAGGAAAGCTGCTTGGAAGAGGCACATTTGGACATGTCTATGTTGGCTTCAATAAGGAAAGTGGTGAAATGTGTGCAATGAAAGAGGTAACTCTGTTTTCAGATGATGCCAAATCTAAGGAAAGTGCTAAGCAATTAATGCAGGAAATTACCTTATTAAGCCGTTTACGGCATCCAAATATTGTGCAGTATTACGGATCTGAATCAGTAGATGACAAGCTCTACATATACCTGGAGTATGTAGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGGCAATTTGGTGAAGTAGCTATTCGTAGTTTTACTCAACAAATTTTGTCAGGACTTGCTTATTTACATGCTAAAAATACCGTCCATAGGGACATTAAAGGAGCAAATATACTGGTAGATACTAATGGACGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATATAACAGGGCAAACATGTCCATTATCATTCAAGGGAAGTCCTTATTGGATGGCTCCTGAGGTTATAAAGAACTCCAATGGTTGCAACCTTGCTGTCGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACAACCAAGCCTCCTTGGAGTCAGTATGAAGGGGTTGCTGCCATGTTCAAGATTGGGAATAGCAAGGAACTCCCAACGATCCCAGATAATCTCTCTAGTGAAGGAAAAGATTTTGTTAGGAGATGTCTACAACGTAATCCATACAATCGCCCTCCAGCCATTGAATTATTGGAACACCCTTTTGTAAAATGTGCTGCACCTTTAGAAAGACCTATTCTGGGTCCTGAAGCTTCAGACCCTATATCTGAGATTGCAGAAGGAGCAAAAGCTCTGGGCATTGGACAAGGAAGGAATCTTTCTACGTTGGATTCAGATAGACTTTCTCTTCATTCTTCTAGATTTTTGAAAACAAATCCTCATGCAAGTGAAATCCATATTCCAAGGAATATATCATGCCCTGTCTCTCCCATTGGAAGCCCACTTTTGAGGCCAAGATCACCACAGAATGTAAATGGTAGAATGTCTCCCTCTCCTATATCCAGCCCTTCTGGTGCATCCACACCTCTTAATGGTGGTAGTGGTGCCATTCCATTTAGCAATCACCTAGTTTACTTTCCAGAGGGTCTTGGAAGCTTGCCAAAGTCCTCAAATGGTGCCTACAATAGTGTCCCTGCTCATCATGACTCAAATGTTGACATTTTTCGAGGAATGCAAAAGACATCTCACATTACATCAGAGCTGGTTCTTAGTGAAAATGATGGTCTGGGGAAGCAGTTTGCAAGGCATCCTCCTCATGATGAGCCATATGTTCAATCAGTCTTGGCTGATCGTGTTTGCCGGCAGCTGCTGGGGGATCATGTCTACCCATCCCTTGATCTAAGTCCCAACTCATCTTTGCTCCGCCGACCAAATGGTTTATGA 2688 0.4479 MPSWWGRSSSKETKKKASKESFIDTLHRKFKIPSEGKLSSRSGESRRHRNDAISEKGAQSRSESTSPSHSKVARCQSFAERPHAQPLPLPGLHPSNVSRADSEISLSTKSRVEKGSKPSLFLPLPKPGCMRGRLNPADLDGDLVTASVSSESSADSDEPVDSNNRSPLATDSETGTRTAAGSPSSLVLKDQSYAVSQVNSREAKKPVNLLGNHMSSTSPKRRPLSNHVPDLQIPPRGAFCSAPDSSMSSPSRSPLRAFGTEQVLNSAFWAGKPYSEVNLVGSGHCSSPGSGHNSGHNSMGGDMSGQLFWQPSRGSPEYSPVLSPRMTSPGPSSRIQSGAVTPIHPRAGGAPTESQTGRVDDGKQQSHRLPLPPLAVTNSMPFSHSNSAATSPSMPRSPGRADNPLSPPLSPGSRWKKGKLLGRGTFGHVYVGFNKESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSESVDDKLYIYLEYVAGGSIYKLLQEYGQFGEVAIRSFTQQILSGLAYLHAKNTVHRDIKGANILVDTNGRVKLADFGMAKHITGQTCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDNLSSEGKDFVRRCLQRNPYNRPPAIELLEHPFVKCAAPLERPILGPEASDPISEIAEGAKALGIGQGRNLSTLDSDRLSLHSSRFLKTNPHASEIHIPRNISCPVSPIGSPLLRPRSPQNVNGRMSPSPISSPSGASTPLNGGSGAIPFSNHLVYFPEGLGSLPKSSNGAYNSVPAHHDSNVDIFRGMQKTSHITSELVLSENDGLGKQFARHPPHDEPYVQSVLADRVCRQLLGDHVYPSLDLSPNSSLLRRPNGL 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1190g00004 895 SMART serkin_6 415 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1190g00004 895 FunFam Mitogen-activated protein kinase kinase kinase 413 696 - -
Gabi1190g00004 895 MobiDBLite consensus disorder prediction 98 114 - -
Gabi1190g00004 895 SUPERFAMILY Protein kinase-like (PK-like) 413 749 IPR011009 -
Gabi1190g00004 895 MobiDBLite consensus disorder prediction 57 73 - -
Gabi1190g00004 895 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524
Gabi1190g00004 895 MobiDBLite consensus disorder prediction 145 185 - -
Gabi1190g00004 895 CDD STKc_MEKK1_plant 414 671 - -
Gabi1190g00004 895 Pfam Protein kinase domain 416 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1190g00004 895 Gene3D Transferase(Phosphotransferase) domain 1 413 685 - -
Gabi1190g00004 895 MobiDBLite consensus disorder prediction 197 224 - -
Gabi1190g00004 895 MobiDBLite consensus disorder prediction 746 781 - -
Gabi1190g00004 895 MobiDBLite consensus disorder prediction 285 416 - -
Gabi1190g00004 895 MobiDBLite consensus disorder prediction 751 781 - -
Gabi1190g00004 895 MobiDBLite consensus disorder prediction 285 339 - -
Gabi1190g00004 895 MobiDBLite consensus disorder prediction 9 56 - -
Gabi1190g00004 895 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 57 684 - -
Gabi1190g00004 895 ProSiteProfiles Protein kinase domain profile. 415 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1190g00004 895 MobiDBLite consensus disorder prediction 1 185 - -
Gabi1190g00004 895 MobiDBLite consensus disorder prediction 378 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1190g00004 Gabi-Chr1190 28188 35581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1190g00004 1 884 MAP Kinase Kinase Kinase AT1G63700 59.239 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi1190g00004 Pkinase 9.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1190g00004 K20717 - gmx:100819762 1483