Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1189g00009 ATGGTGAAACATAAGGTGCTCATGTTAATGGTGCACTCTTTCTTCTTGTGCTTCATTCACACATTACCTATACATGGCACTTTCACTATTACTCCAAATCAATCTATCCAGGGTAATGAGACCACCCTTGTTTCTGCAGCTGGAAATTTTGAAGCTGGATTCTTCAACTTGGGAAATTCACAACTTCAATACTTTGGTATATGGTATAAGACCATAACACCAAGGACTATTGTTTGGATCGCCAATAGAGATACCCCACTTCAAAAGTCAACACCAATTCTCAAACTTACAGATGAAGGAAATCCTGTTATTCTTGATGGCTCTAGGGGCATTGTGTGGTCCTCCAAAGCATCAAGAACTGCAGAGAAGCCAGTTATGCAGCTTTTGGATTCAGGGAACCTTGTTGTGAAAGGTGGAGACAGTGAAGAGAATCTTTTGTGGGAAAGTTTTGATTATCCTGGTGACACTTTCCTTGCAGGAATGAAACTCAAAACAAGTTTAGTTACTGGTCCTTATAGGTCTCTCACTTCTTGGAAAAACACAGAAGATCCTTCTGTTGGTGAGTTTTCATATCATGTAGATGCTCATGGTTTTCCTCAACTAGTTACTACAAAGGGTGCAACTTTATTTAGCAGAGGAGGACCATGGAATGGCCATGTTTTTAATGGGGTTTCATGGCTGAGGATGCTTAATCTTTTCAAATATTCTTTAGAATATACCGACAAGGAAATCTCTTATCAATATGAAACCTTGAATAGTGACACTGTTACTAGATTAGTGCTCAATCCATTAGGCTTAACACAACGTTTCTTATGGTCAGATAGGAAAAAAGGTTGGGAGATTATATCAACTCGTCCAATGGATCAGTGTGGATATTACTCTTTTTGTGATGTTAATTCTATCTGCAATATTGCCAACTCTCCAAAAATATGTCAATGCATGGAAGGTTTCGTACCAAAATTCCAAGAAAAATGGGATTCATTAGATTGGCTTGGTGGGTGTGTTAGAAGAATGAACTTGAGTTGTCATATTGGAGATGGGTTTCTGAAGTATGAAGGAATGAAGTTGCCAGACACATCTTCTTCCTTGTTTAACAAGAGCTTGAGCCTTGAGAAATGTGAGACATTATGTTTGAAAAACTGCTCTTGCACAGCATACGCAAATTTAGATGTCAGACAAGGTGAGAGTGGTTGCTTGCTTTGGTTTGATAACATTCTGGACTTGACAAAGCACACAGACCAAGGACAAGATATTTACATACGACTTGCAGCTTCAGAGTTTGATCAAAGAGGGAGTAACTTTAATAACAAGAAGCTTGCAGGGACAATAGTAGGACTTGTTATATTCATCATTTTACTTGGACTGGCCACATTCACATGTAAGAGGAAGAGGCTCCCAAAGAGAGGGATGCTAAAAATATTTCACTGGAAGTACAAGAGGGATAAGGAAGACGTGGAGTTATCAACTATATTTGATTTTTCAGTCATCTCTAATGCCACAAATAACTTTTCAAACAGTAACAAGTTAGGACAAGGTGGCTTTGGACCAGTATACAAGGGGATATTGGCAGATGGGCAAGAGATTGCAGTCAAGAGGCTTTCAAAAACTTCTGATCAAGGAGCAGAGCAGTTCAAAAATGAGGTCATGTTGATGACAAAACTTCAGCACCGCAATCTTGCAAAACTTCTTGGTTGTTCTATTCATCAAGATGAAAAGCTTTTGATCTATGAATTCATGCCCAACAGAAGCTTGGATTTCTTTATATTTGATTCAACTCGAAGTAAACTCCTAAATTTTACAAAGCGTCTCCAAATTATTGATGGGATCGCAAGAGGGCTACTCTATCTTCATCAAGACTCCAGATTAAGAATCATCCACAGAGACCTCAAAACAAGTAATATTCTTCTTGATAACAATATGAACCCAAAGATATCAGATTTTGGTCTGGCTAGAATATTTAGAGGAGATCAAGCTCAGGCCAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCAGTGCATGGATCTTTTTCATTCAAATCTGATGTATTTAGCTTTGGAGTAATTTTACTAGAGATAATTAGTGGGAGAAAGAATCGGAATTTTTATGACTCTCAGCATCATCTTAATCTTCTTGGTCATGCATGGAGATTATGGATTGAAGAAAAGCCACTGGAGCTAATGGATAACACATTGGATGATTCAGCCACTCCACCTGAAATAATGCGATGTATTCATGTGGGTCTACTTTGTGTACAACAAATACCAGAAAATAGACCCAACATGTCATCTGTGGTTTTAATGTTGAATGGTGAAAAGTTGTTGCCTGAGCCAAGCCAACCTGGTTTCTACACAGGAACAGGTCATCAACCAATTCAGGTAGAATCTTCTTCAAGAAGTTGTGGAAATTGTTCACAAAATGAAGTTTCTATATCCTTGTTGGAGGCCAGATAG 2469 0.3836 MVKHKVLMLMVHSFFLCFIHTLPIHGTFTITPNQSIQGNETTLVSAAGNFEAGFFNLGNSQLQYFGIWYKTITPRTIVWIANRDTPLQKSTPILKLTDEGNPVILDGSRGIVWSSKASRTAEKPVMQLLDSGNLVVKGGDSEENLLWESFDYPGDTFLAGMKLKTSLVTGPYRSLTSWKNTEDPSVGEFSYHVDAHGFPQLVTTKGATLFSRGGPWNGHVFNGVSWLRMLNLFKYSLEYTDKEISYQYETLNSDTVTRLVLNPLGLTQRFLWSDRKKGWEIISTRPMDQCGYYSFCDVNSICNIANSPKICQCMEGFVPKFQEKWDSLDWLGGCVRRMNLSCHIGDGFLKYEGMKLPDTSSSLFNKSLSLEKCETLCLKNCSCTAYANLDVRQGESGCLLWFDNILDLTKHTDQGQDIYIRLAASEFDQRGSNFNNKKLAGTIVGLVIFIILLGLATFTCKRKRLPKRGMLKIFHWKYKRDKEDVELSTIFDFSVISNATNNFSNSNKLGQGGFGPVYKGILADGQEIAVKRLSKTSDQGAEQFKNEVMLMTKLQHRNLAKLLGCSIHQDEKLLIYEFMPNRSLDFFIFDSTRSKLLNFTKRLQIIDGIARGLLYLHQDSRLRIIHRDLKTSNILLDNNMNPKISDFGLARIFRGDQAQANTNRVMGTYGYMPPEYAVHGSFSFKSDVFSFGVILLEIISGRKNRNFYDSQHHLNLLGHAWRLWIEEKPLELMDNTLDDSATPPEIMRCIHVGLLCVQQIPENRPNMSSVVLMLNGEKLLPEPSQPGFYTGTGHQPIQVESSSRSCGNCSQNEVSISLLEAR 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1189g00009 822 Pfam PAN-like domain 342 408 IPR003609 -
Gabi1189g00009 822 PIRSF SRK 1 822 IPR024171 GO:0004674
Gabi1189g00009 822 Pfam S-locus glycoprotein domain 212 321 IPR000858 GO:0048544
Gabi1189g00009 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 578 - -
Gabi1189g00009 822 Gene3D Phosphorylase Kinase; domain 1 472 578 - -
Gabi1189g00009 822 CDD B_lectin 38 153 IPR001480 -
Gabi1189g00009 822 CDD PAN_AP_plant 339 423 - -
Gabi1189g00009 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 184 IPR036426 -
Gabi1189g00009 822 Pfam Protein tyrosine and serine/threonine kinase 506 771 IPR001245 GO:0004672|GO:0006468
Gabi1189g00009 822 CDD STKc_IRAK 509 776 - -
Gabi1189g00009 822 ProSiteProfiles Protein kinase domain profile. 503 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1189g00009 822 SUPERFAMILY Protein kinase-like (PK-like) 486 774 IPR011009 -
Gabi1189g00009 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 782 - -
Gabi1189g00009 822 Gene3D Hepatocyte Growth Factor 339 424 - -
Gabi1189g00009 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 341 422 - -
Gabi1189g00009 822 SMART ntp_6 343 422 IPR003609 -
Gabi1189g00009 822 Gene3D - 25 150 IPR036426 -
Gabi1189g00009 822 Gene3D Transferase(Phosphotransferase) domain 1 579 780 - -
Gabi1189g00009 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 150 - -
Gabi1189g00009 822 SMART blect_4 34 153 IPR001480 -
Gabi1189g00009 822 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
Gabi1189g00009 822 Pfam D-mannose binding lectin 76 179 IPR001480 -
Gabi1189g00009 822 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 765 - -
Gabi1189g00009 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Gabi1189g00009 822 SMART serkin_6 503 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1189g00009 822 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1189g00009 Gabi-Chr1189 182972 187550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1189g00009 431 788 Receptor kinase-like Gene Family AT4G23230 52.222 2.89e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1189g00009 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1189g00009 - - gmx:100803275 1270.37