Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1189g00006 ATGGAAAACATGGAAAAGAGAAAGTTTTCTGAATTGTTATCAGAGCTGATTGTTTTGGCTGATGAGGTTGCTTCTTTTGCTAAGAACTCTGAAATTGAGGTGGATATTTTTGCTGAGTTTGCCTTGTTGGTAGAGAAATTTCCACCAATCTTCAATGATTTGAAGGACAAAAGCAGAATCTTGGACAAGCCACCTATTAGAAAATCTTTGGAATCTCTTGAAAATGAGCTAAGGCGTGCTAAAGCTTTGACAAGAAGCTCCAATTTGAGACAACCTATCAAGCAAATTGAGGACATAACACATGATATTGGTCGATCATTGGGCCTTCTACTTGTAGCCAGCCTTGAAGTGTCCATGGATTTTAAAGAAAAGATTGGCATATTGCAAAGACAGATGATGAATGTAAGATTTGATGGCAATTTGAGTCTAACCTCAAGTCCAAAATCAGAGTTTGTCAGCAGTAACCAGAAGGTCAATGCGGAAATAGAAGAGGAAATAATTAATGTCTCTATCGATGATGTTGTTTTGCAACTTAAGAATGGTAATGAAGAAGAATTTGCAGCTGCACTTTTGAGATTAAAGGAGTTCATGAGGAGTGAAAAACTCGATGGTGGTTTGATTAACGAGGAAGCAACTGTTTCCATTCTTTTCAATCGTCTAGGTTCATGTAAGGCAGACAATAGGGTGGCCATCATTCAATTGCTAAGAAGTATTGCTTTTGGAAATGATGAGAAAAAGGAGAATATGGCGAATATTGAGTTTTTATCAGCAGTGGTGAAGTCTTTGACAAGAGATTCAAAAGAGAGGAGGGAAGCTGTGGGGCTGTTGCTAGACCTCTCTGACCTTCCTGCAGTTCGACGGCAAATTGGAAGAATTCAAGGGTGCATTGTTATGTTAGTTGCTATTCTTAATGGGGATGACCCTGTTGCTTCACATGATGCAGCGAAGTTATTGGATATATTGTCTAGTAATACTCAAAACGCGCTTCATATGGCCGAGGCTGGCTACTTTAGACCACTAGTGCAGTATTTGAAGGAAGGGTCTGACATGAACAAGGTCCTAATGGCGACTGCACTTTCTAGGTTGGAGCTCACTGATCACAGCAAACATGTCCTTGGAGAAGATGGGGCAATTGAGCCCCTTGTCAAAATGTTTAATACTGGGAAACTTGAGTCCAAGTTATCATCTCTAAATGCGCTACAAAATCTGTCTACCTTGACAGAAAATGTGCAACGTTTGATCCGATCCGGAATTGCAGGATCTCTTCTACAACTTCTTTTCTCAGTAACATCTGTGCTCATGACTCTGCGCGAGCCTGCATCAGCTATTCTTGCAAGAATTGCTCAGTCAGAATCAGTTCTTCTTGATCAAGATGTGGCTCAACAGATGCTTTCACTTTTGAATCTTTCCAGCCCTATAATTCAAGGCCATTTATTAGAAGCACTAAATAGCATAGCTGCCCATCCTGGCGCATCAAAAGTGAGAAGAAAAATGAAGGAAAAAGGTGCTCTTCAGCTACTCTTACCTTTTCTTAAGGAAAATAACACCAAAATCCGGAGTAAGGTCTTGCATTTGCTATACACTCTCTCTAAAGATCTAACAGATGAGTTAACTGAACATCTTGATGAAACTCATCTTGTGAATATTGTTAATATTGTCTCATTATCAACATCAGAGAGTGAAAAAGCTGCTGGTGTTGGCATACTGAGTAATCTTCCTGTTAGTGATAAAAAAGTGACAGATGTGTTGAAGAAGGCAAATTTACTTCCCATTTTGATATCCATTGTGTATTCTAGCACAGGAAGTAATTCACCCACATCAAATAGCTTGGCAGAGAGTGTTGCAGGTATTATAATCCGCTTCACAAATTCGTCTGACAAGAAACTACAACTTCTTTCAGCAGAACATGGGGTTATTCCTTTGCTTGTCAAACTACTCTCAAGTGGTTCACCAATCACGAAATCGAGAGCTGCTAACTCTTTGGCTCTACTATCACAGAATTCTATGTCTCTTAGGAAGTCTAGAAAGTCAAGTTGGTTGTGTGTTCTGCCCTCGGCCGATGCATATTGCGAAGTCCATGATGGCTATTGCTTTGTGAAGAGCACATTTTGTTTGGTCAAGGCAGGTGCAGTTTCACCACTTATCCAAATATTGGAAGATAAGGAGAGGGAAGCTGTTGAAGCTGCTCTCAGTGCCCTTTCAACTCTTTTGCAAGATGAAATATGGGAAGGTGGTGTCAGTTTCATTGCCAAATTTTCAGGTGTGCAAGCTATTATAAAAAGCCTAGAAGTTGAGAATGCAAAGGGTCAAGAGAAAGCACTATGGATGCTCGAGAGAATATTCAGGGTTGAAGAACATAGAGTAAAATATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTGGCTCAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTAGCAGAGCTTGAGCTCTTGCAAGCTCAATCAAGTTACTTTTGA 2493 0.3999 MENMEKRKFSELLSELIVLADEVASFAKNSEIEVDIFAEFALLVEKFPPIFNDLKDKSRILDKPPIRKSLESLENELRRAKALTRSSNLRQPIKQIEDITHDIGRSLGLLLVASLEVSMDFKEKIGILQRQMMNVRFDGNLSLTSSPKSEFVSSNQKVNAEIEEEIINVSIDDVVLQLKNGNEEEFAAALLRLKEFMRSEKLDGGLINEEATVSILFNRLGSCKADNRVAIIQLLRSIAFGNDEKKENMANIEFLSAVVKSLTRDSKERREAVGLLLDLSDLPAVRRQIGRIQGCIVMLVAILNGDDPVASHDAAKLLDILSSNTQNALHMAEAGYFRPLVQYLKEGSDMNKVLMATALSRLELTDHSKHVLGEDGAIEPLVKMFNTGKLESKLSSLNALQNLSTLTENVQRLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESVLLDQDVAQQMLSLLNLSSPIIQGHLLEALNSIAAHPGASKVRRKMKEKGALQLLLPFLKENNTKIRSKVLHLLYTLSKDLTDELTEHLDETHLVNIVNIVSLSTSESEKAAGVGILSNLPVSDKKVTDVLKKANLLPILISIVYSSTGSNSPTSNSLAESVAGIIIRFTNSSDKKLQLLSAEHGVIPLLVKLLSSGSPITKSRAANSLALLSQNSMSLRKSRKSSWLCVLPSADAYCEVHDGYCFVKSTFCLVKAGAVSPLIQILEDKEREAVEAALSALSTLLQDEIWEGGVSFIAKFSGVQAIIKSLEVENAKGQEKALWMLERIFRVEEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQAQSSYF 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1189g00006 830 SMART arm_5 491 531 IPR000225 GO:0005515
Gabi1189g00006 830 SMART arm_5 698 738 IPR000225 GO:0005515
Gabi1189g00006 830 SMART arm_5 242 281 IPR000225 GO:0005515
Gabi1189g00006 830 SMART arm_5 324 364 IPR000225 GO:0005515
Gabi1189g00006 830 SMART arm_5 365 405 IPR000225 GO:0005515
Gabi1189g00006 830 SMART arm_5 626 666 IPR000225 GO:0005515
Gabi1189g00006 830 SUPERFAMILY ARM repeat 371 785 IPR016024 -
Gabi1189g00006 830 SUPERFAMILY ARM repeat 171 426 IPR016024 -
Gabi1189g00006 830 Gene3D - 170 366 IPR011989 -
Gabi1189g00006 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 149 830 - -
Gabi1189g00006 830 Gene3D - 367 678 IPR011989 -
Gabi1189g00006 830 Coils Coil 70 90 - -
Gabi1189g00006 830 Gene3D - 695 827 IPR011989 -
Gabi1189g00006 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1189g00006 Gabi-Chr1189 159902 164219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1189g00006 181 830 U-box Gene Family AT1G76390 28.777 1.81e-45 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1189g00006 K08332 - gmx:100791453 1340.1