Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1188g00014 ATGGAAGAGCAATTTTCTCCTGAGGGAAAAGGAATTGGCTCTCATTTGGAGGGATCTACATCATTAGATGATGGAATGAAAAATTCAGTTTCAGAGGACATGTTTTACAACTTCTCCGAGCTCATGAACTTTGATACCTATGCTGGTTGGTGTAATAGTCCATCCATGACTGATCATAGCTTGGCTAATGGACTTTCATCATTTGCCTCAATACCATATCCACCACCGGATGGGTTGAATTTAGTGGTGGAACAAAGCAATGGTCCATTCTTTATGACAGAAGTTAATGGGAATTACAATGCTATGGAAAGTTCCCTCAGTTATGCAGAGAAAGTTATATATCAGCAAATGGACACCCAACTTGGGTTCTCAGATGATGCAAATGATGCATCTGGTTGGTCACTTGATGAGAGAATGCTGAGGGCTTTGTCATTCTTCAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTTCCCATGAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAACAACCTTATTTGCTAGACCAAAAGCTTGCAGGGTATCGCGAAGTGTCAAGGACATTTACATTTTCTGCAGAAGAAAAACCAGGATCTTTTGCAGGGCTTCCTGGTCGCGTGTTTATCTCCCATGTTCCTGAATGGACCTCCAATGTTGGTTACTACAATAAAACTGAGTACGTGAGGTTGGACCATGCAATTAATCATGAGGTTCGTGGATCAATTGCTCTTCCCATATCTGATCTGCACTCTGAAGTTCCATGCTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGCCTAATTTTGACAGAGAATTAGAAATTGTATCTCATGCTCTCCAGCTTGTAAACTTAAGGACTACTATGCCTCCACGACTTCTTCCCCAGTATCTATCAAATAACAAAAGAGCTGCTTTAACAGAGATAGTTGATGTGTTACGAGCTGTGTGCCATGCACATAGATTGCCGCTGGCATTGACATGGATTCCCTGTTGTTACAGTGAGGGAATAGGAGATGAAACTGACAGAATACGAATTAAAGAAGGTCGTACAAGTTCTAATGAAAAATGCGTACTATGCATTGAAGAATCAGCTTGCTATATAAATGATAGAGTGGTAGGAGGATTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGGCAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATCCCGATGTGAAGGCTTATGATATTAATGAATATCCCCTTGTTCATCATGCACGCAAATATAATTTGAATGCTGCAGTTGCAATTAGGCTGAGGAGTACATATACTAATGATGATGATTACATATTAGAATTCTTTCTACCTGTCAATATGAGAGGGAGTTCAGAACAGCAACTTTTATTAGACAATCTCTCAGGTACTATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTTCAGATGCTGAATTATCAGGAATAGAAGGCTCTCAAGCTGGGCTTCAAAAGGGAAAAGTCCCAGGGTTTTTTTCTCTGTCCAGGAGAAACTCTCAGATATTATTAGTGAACGGTGACAATGATTCAGTCCAAAAGATGTCCTTGATGGCATCTAACCCGAGAAATAAAGGAATTGAAGCTGCTCAGAACCAGGCGATGAATGGATCAAAAAAGCAGGTCGACAAAAAGAGAAGTACTGTGGAAAAGAATGTTAGCTTGAGTGTTCTTCGACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATATCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCATTAAAGAAAATCCAGACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGCTGAAGTTTGATCCTTTTACTGGGGGGTTTGTGGCAGGAGGATCAATTATCCCAGAAATTGATACACATAAAAATCTTCTGTTCCCTGAGAAAAGTGCTGAAAAAGACCATAAGCCTGTAACACGAGCAGCACTCTCAGTACCTCCAGCACCAGGTAGCACAGGTGAGAATTCAGCTATTAAGTTGGAGGGTGATGATGTGTGTTTGGTGGGAAACCAGCTTGTGCACTCAAAAAGTGTGCTTATCTCCAATTCCCACGAGGGAGAATTGAAGAAAGACAATGCTGCTTCTGTTAATTGTCCTGAACAAACCTGTGTGGGTTCTGTTCTTGAAGAAGAGAGGGACAAATGGGGTTTGAACAAAAGCAGTTTGGGAGTAGAAAATTCTAGCCGTGATATTGTGTGTCATAGTTCAATCTCCTTGATTGCTGATGAGATGGAAATGGGTGTGGATGGGGGACATGTAGCTGAAGAACATAACTGCCCTACTTCTTCAAGCATGACAAACTCATCCAATAGCTCTGGATCAATGATGGATGGCAGTTCCTCAGGCTCTCAGAGCTTTGAGAAGCATAAGCATTCGAAAGCCATATCAACTTGTGTTGATAGTGGGTCAAAATTTATTGTCAAAGCTACTTATAAAGGAGATACTATTCGTTTTAAGTTTGATCCATCGGCAGGTTGTTTCCAGCTATATGAAGAAGTTGGAACAAGGTTCAAATTACAAAATGGGTCATTCCAACTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGCAAGAATGCATAGAAATATTGGATGATATTGGCACACACACTGTGAAGTTTCTCGTTCGTGATATGCCTAGCGTTTTAAGCAGCCGTGGCAGTAACAGTTGCTTCTTGGCAGACAACAGCTCATAG 2835 0.4116 MEEQFSPEGKGIGSHLEGSTSLDDGMKNSVSEDMFYNFSELMNFDTYAGWCNSPSMTDHSLANGLSSFASIPYPPPDGLNLVVEQSNGPFFMTEVNGNYNAMESSLSYAEKVIYQQMDTQLGFSDDANDASGWSLDERMLRALSFFKESAGGGILAQVWVPMKHGDEFILSTSEQPYLLDQKLAGYREVSRTFTFSAEEKPGSFAGLPGRVFISHVPEWTSNVGYYNKTEYVRLDHAINHEVRGSIALPISDLHSEVPCCAVLELVTTKEKPNFDRELEIVSHALQLVNLRTTMPPRLLPQYLSNNKRAALTEIVDVLRAVCHAHRLPLALTWIPCCYSEGIGDETDRIRIKEGRTSSNEKCVLCIEESACYINDRVVGGFVHACVEHHLEEGQGIAGKALQSNHPFFYPDVKAYDINEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICRSLRTVSDAELSGIEGSQAGLQKGKVPGFFSLSRRNSQILLVNGDNDSVQKMSLMASNPRNKGIEAAQNQAMNGSKKQVDKKRSTVEKNVSLSVLRQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPFTGGFVAGGSIIPEIDTHKNLLFPEKSAEKDHKPVTRAALSVPPAPGSTGENSAIKLEGDDVCLVGNQLVHSKSVLISNSHEGELKKDNAASVNCPEQTCVGSVLEEERDKWGLNKSSLGVENSSRDIVCHSSISLIADEMEMGVDGGHVAEEHNCPTSSSMTNSSNSSGSMMDGSSSGSQSFEKHKHSKAISTCVDSGSKFIVKATYKGDTIRFKFDPSAGCFQLYEEVGTRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECIEILDDIGTHTVKFLVRDMPSVLSSRGSNSCFLADNSS 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1188g00014 944 Pfam RWP-RK domain 569 617 IPR003035 -
Gabi1188g00014 944 Gene3D - 840 923 - -
Gabi1188g00014 944 Pfam PB1 domain 846 924 IPR000270 GO:0005515
Gabi1188g00014 944 PANTHER PROTEIN NLP8 117 933 IPR045012 GO:0003700
Gabi1188g00014 944 ProSiteProfiles RWP-RK domain profile. 551 637 IPR003035 -
Gabi1188g00014 944 CDD PB1_NLP 844 924 IPR034891 -
Gabi1188g00014 944 MobiDBLite consensus disorder prediction 796 822 - -
Gabi1188g00014 944 ProSiteProfiles PB1 domain profile. 843 925 IPR000270 GO:0005515
Gabi1188g00014 944 SUPERFAMILY CAD & PB1 domains 837 928 - -
Gabi1188g00014 944 SMART PB1_new 843 925 IPR000270 GO:0005515
Gabi1188g00014 944 MobiDBLite consensus disorder prediction 790 825 - -
Gabi1188g00014 944 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1188g00014 Gabi-Chr1188 77616 83352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1188g00014 1 940 NLP Transcription Factor Family AT2G43500 49.336 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi1188g00014 PB1 7.3e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1188g00014 - - aprc:113864503 1459.12