Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1187g00003 ATGCTTGAACAGGATGAGTGTCTCCTTAGATCACGTTTCTTGCTTTGTATCTTCATTGGCTTCTTGATACATTCTGTTGTGATTGCTGAGATTCCATTGGGTTCCAAACTTTCTGTGGTTGACAATGATTATTGGGTTTCTTCCAATGGTGATTTTGCATTAGGATTCTTCAACATTTCAGATCAACCTAACCAGTTTAGTGTTGGTATTCGTTTCAATTCCAAGTCTATTCCATATAGCCAACAAACTGTGGTCTGGGTTGCTGGTGCTCATGTCACAGTTGGTGACATGTCCTATTTTGAACTCACACAGGAAGGGGAACTGGTCCTGTTTGATTCCTTAAAAGAAGGTTCTGTTTGGACTAGTCCAACAAGAAACCGATCTGTTTCTTCAGCTGCTCTTCATGACAGTGGAAATCTTGTTCTAATGGACAGAGATCAAAACATCATTTGGCAAAGTTTTGATAATCCATCTGATACACTTCTCCCAGGACAGAGTTTAGTTGCTCCTAATTCACTTCGAGCTGCAAGCAAGGATCCCGAGTCCAGTTACTATAGTCTTCATATGAATGCTTCAGGTCATTTAGAGCTACACTGGGAAAGTAATGTTATCTACTGGACAAGTGAAAACCCTTCTGCTTCAAATCTCAGTGCTTTTCTTACAACCAGTGGAGCTTTTGAACTGCGAGACCGAAGTTTGAAGCCTGTTTGGTCTGTGTTTGGAGATGATCACAATGACTCTGTCAGTTACAGATATCTTAGGCTTGATGGGGATGGCAATCTCCGCTTATATTCATGGGTTGAAACTACGCGATCATGGAGATCAGTGTGGCAAGCAGTTGAGAATCAGTGCAAGGTCTTTGCAACTTGTGGTCAACTTGGTGTCTGTGTCTTCAATGATTCAGGTTCGGCTGATTGCAGATGCCCATTTGAGGTAACTGGGACTAACAAATGTTTGGTTCCATATGAAAAGGAGTGTGAATCTGGCTCCAGTATGATAGCATATAAGAACATTTATCTATATGGAATCTACCCTCCTGATGATACTGTTATCACAAGTAGTTTGCAGCAATGTGAACAGTTGTGCCTGAATGACACACAATGTACGGTTGCAACCTTTTCTAATAGTAGAACTCCGCAATGCTCGATAAAGAAAACTGAGTATGTCACTGGTTATGAAGATCCATCTGTAAGCTCAACATCATTTGTTAAGAGATGCTCAGGTCCATTTGCTGTAAATCCCAATCTAACAAAATCTCCTCCATCCGAGCTGCCTCCTAGGCTATGTGTTCCTTGTCTAATAGGAGCTGCCACAGCCACATTTTTCATCTTCGTTATTCTCCAGTTGGGAATTGTGTTCTTCATCTGCAGAAGAAAAAGCTCTACCAGGAAAAAAGTCACTTTAGCTTTCACAAGTCCAAACTCAAAGGGTTTAATTGTGTTGTCCTTCTCAGAAATCAAGAGCCTCACAGGGGATTTCAAGAATCAAATCGGGCCAAAGATGTTCAAGGGTTTGCTACCAAACAATCACCAGATTGCTGTTAAAGACCTGAATGCATCCATAGAAGAAAGGAAGTTCCGGAGTGCTGTTCTGAAGATGGGTAGCATCCACCACAAGAACCTTGTGAAGCTTGAGGGTTATTGCTGTGAGTTTGATCATAGATTTCTGGTGTATGAATATGCCAAAAATGGTTCATTGGACAAGTACATAGATGATTCTGCCCTTTGCAGGAAGCTAACTTGGAGAAAGAGAGTTGAAATATGCTCAAGTGTGGCAAAGGCCATCTCTTACTTGCACTCTGGGTGTAGGGAGTTCATAAGCCATGGAAATTTGAAATGTGAAAATGTTATGTTGGATGAAAACTTAGGTGCCAAGGTGACTGAATTTGGGTTTGCTAGGGTAGATGGTAACGCAACATATTGTGGCTTTTCAGCTGAGAAGGATGTAGAGGATTTTGGCAAGTTAGTTTTAACTATGATAACCGGGTGTCGTGATCACGAACACGTGGAACTTTGTGAGTGGGCATATAAAGAATGGATGGAAGAGAGGGTAGCTAATGTGGTTGATAAAAGAATGGAAGGTGGTTACAACTCACAGGAACTGGAGCGTGCATTAAGAATTGCATTCTGGTGCCTTCAAATGGATGAACGTAGAAGACCTTCCATGGGGGAGGTAGCAAGAGTACTTGATGGTACATTGAATGTTGATCCCCCACCACCTCCATTAGCCTTTCAGAGGCAGTTGCAGATAGATGATTCAGAAGAAAATGGTTCAGAATCAGAAGCATAG 2289 0.4172 MLEQDECLLRSRFLLCIFIGFLIHSVVIAEIPLGSKLSVVDNDYWVSSNGDFALGFFNISDQPNQFSVGIRFNSKSIPYSQQTVVWVAGAHVTVGDMSYFELTQEGELVLFDSLKEGSVWTSPTRNRSVSSAALHDSGNLVLMDRDQNIIWQSFDNPSDTLLPGQSLVAPNSLRAASKDPESSYYSLHMNASGHLELHWESNVIYWTSENPSASNLSAFLTTSGAFELRDRSLKPVWSVFGDDHNDSVSYRYLRLDGDGNLRLYSWVETTRSWRSVWQAVENQCKVFATCGQLGVCVFNDSGSADCRCPFEVTGTNKCLVPYEKECESGSSMIAYKNIYLYGIYPPDDTVITSSLQQCEQLCLNDTQCTVATFSNSRTPQCSIKKTEYVTGYEDPSVSSTSFVKRCSGPFAVNPNLTKSPPSELPPRLCVPCLIGAATATFFIFVILQLGIVFFICRRKSSTRKKVTLAFTSPNSKGLIVLSFSEIKSLTGDFKNQIGPKMFKGLLPNNHQIAVKDLNASIEERKFRSAVLKMGSIHHKNLVKLEGYCCEFDHRFLVYEYAKNGSLDKYIDDSALCRKLTWRKRVEICSSVAKAISYLHSGCREFISHGNLKCENVMLDENLGAKVTEFGFARVDGNATYCGFSAEKDVEDFGKLVLTMITGCRDHEHVELCEWAYKEWMEERVANVVDKRMEGGYNSQELERALRIAFWCLQMDERRRPSMGEVARVLDGTLNVDPPPPPLAFQRQLQIDDSEENGSESEA 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1187g00003 762 ProSiteProfiles Protein kinase domain profile. 483 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1187g00003 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 561 639 - -
Gabi1187g00003 762 Pfam D-mannose binding lectin 83 168 IPR001480 -
Gabi1187g00003 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 157 275 - -
Gabi1187g00003 762 Gene3D Transferase(Phosphotransferase) domain 1 561 736 - -
Gabi1187g00003 762 Pfam PAN domain 345 390 IPR003609 -
Gabi1187g00003 762 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Gabi1187g00003 762 SMART blect_4 36 157 IPR001480 -
Gabi1187g00003 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 640 737 - -
Gabi1187g00003 762 Pfam S-locus glycoprotein domain 246 308 IPR000858 GO:0048544
Gabi1187g00003 762 ProSiteProfiles PAN/Apple domain profile. 326 406 IPR003609 -
Gabi1187g00003 762 PANTHER OS07G0415500 PROTEIN 15 743 - -
Gabi1187g00003 762 MobiDBLite consensus disorder prediction 731 762 - -
Gabi1187g00003 762 SUPERFAMILY Protein kinase-like (PK-like) 483 729 IPR011009 -
Gabi1187g00003 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 156 - -
Gabi1187g00003 762 SUPERFAMILY alpha-D-mannose-specific plant lectins 175 275 IPR036426 -
Gabi1187g00003 762 Gene3D - 157 295 - -
Gabi1187g00003 762 ProSiteProfiles Bulb-type lectin domain profile. 158 276 IPR001480 -
Gabi1187g00003 762 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 208 IPR036426 -
Gabi1187g00003 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 457 560 - -
Gabi1187g00003 762 Gene3D Hepatocyte Growth Factor 337 408 - -
Gabi1187g00003 762 SMART ntp_6 327 405 IPR003609 -
Gabi1187g00003 762 PIRSF SRK 4 762 IPR024171 GO:0004674
Gabi1187g00003 762 Pfam Protein tyrosine and serine/threonine kinase 508 637 IPR001245 GO:0004672|GO:0006468
Gabi1187g00003 762 Gene3D - 29 156 IPR036426 -
Gabi1187g00003 762 CDD B_lectin 46 157 IPR001480 -
Gabi1187g00003 762 Gene3D Phosphorylase Kinase; domain 1 454 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1187g00003 Gabi-Chr1187 119815 122858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1187g00003 408 743 Receptor kinase-like Gene Family AT4G04510 31.818 1.53e-41 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1187g00003 PK_Tyr_Ser-Thr 9.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1187g00003 - - gmx:100815678 1327