Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1187g00002 ATGATGAACCACTTGACCGTTGATACTGAATATTCTTTTGTGAGCTTGCTTGAGCTTGCAGCCAATAATGATGTTGAAGGTTTCAAACGAATGATTGAACGGGATCCTTCCTGTGTAGATGAGATTGGGCTATGGTACAGTCGTCCGAAGGGATCAAAGCAGATTGTCAATGAGCACAGAACTCCTTTGATGGTTGCTGCTACTTATGGTAGCATTGATGTTATGAAACTGATTCTTTCACTATCCGATTATCATGTTAATAAACCTTGTGGCCTTGACAAGTGCACTGCCCTTCATTGTGCGGCATCAGGTGGGGCTGTAAATGCTGTTGATGTTGTTAAACTGCTTCTAGCAGAGGGGGCTGATCCAAATTCTGTGGATGGCAATGGTCATCGTCCAGTTGATGTTATTGTTGTTCCTCCTAAGCTTGACTTTGTGAAAAGCAGTCTTGAAGAACTTCTTCAAACCAAGGATTCCACTGCAGGGTGTGGTCTTAGGGTGATCACAGACCCATCAAACACATATTCCCCACCTTTATCAGCTTCACCAGAGAATGGGTCTCCTTCTGCACCCGATCTCCAATTGAAGTCAAAGCTAAATGATGTCCCTTTTTCTTCTGCATCAGAGAAAAAAGAGTATCCTGTTGATCCATCTCTTCCAGACATCAAGAATAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGATTCGACCTTGTTCACGTGCTTATTCACATGATTGGACTGAATGTCCTTTTGTTCATCCAGGGGAGAATGCTCGAAGAAGGGACCCAAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTTCGAAAGGGTGCTTGCCGGCGTGGAGATATGTGTGACTATGCTCATGGAGTTTTTGAGTGCTGGCTGCATCCAGCACAATATCGAACTCGCCTTTGCAAGGATGGGACTAGTTGCTCCAGAAGAGTTTGCTTTTTTGCCCACACTGCCGAGGAGCTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTTCCATCTCCTCGCTCAAGCACATCTGCAATGGATTTTGCTGCAGCCATGAGCCTGTTACCTGGCTCTCCTTCGGCTATGTCTGTCATGTCTCCTTCACCATTCACTCCACCTATGTCACCCTCTGCCAATGGCATGTCATACTCTTCTGTTGCATGGCCCCAACCAAATGTCCCAGCCTTGCATCTTCCTGGGAGTAATCTTCATTCCAGTCGTTTGAGATCTTCATTCAATGCCAGAGATATTCCTGGGGATAACTTCGACTTGTTGCATGACTTTGATGTTCAGCGGCAACAGCACTTTAATGAGTTATCTTGCCTCTCTCAACAGCCTATGAATTCTAATACCATCAATCGCTCTGGTCGCATGAAAACCCTGACCCCTTCAAATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCTCCTCGGTTTGCTGATCCAGCATTGGCTTCAGCTGTTTTTTCTCCAACACACAAATCAGCCGTCCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTGTCACCCGTGAATACAAACTTTTCTTCTCAAAATGTTGATCATCCTTTATTTCAAGCCTCTTTTGGGGTTCAACCATCAGGAAGGATGTCTCCACGAAATGTGGAACCTATTTCTCCAATGAGTTCTAGGATTTCTATGCTAGCTCAACGTGAGAAGCAGCAACAATTTCGTAGCCTTAGCTCCCGGGAACTTGGCTCTGCTGCTGCTGGGTCTACAATCAATTCTTTGTCAGAATGGGGATCCTCCGATGGTACGTTGGATTGGGCTGTCAGTGCTGATGAATTAGGTAAGCTACGTAGATCATCTTCATTTGAGCTTGGCAATAATGGTGAGGAGCCTGATTTATCATGGGTCCAGTCCCTTGTTAAAGAATCCCCTACTGAGATGAAGGAGAAGTTGGCAACCACTGTCCCAAGTGCTGTAGAAGCTGGATCCTCCATTCAGGGATCAAATATAAGCACACAAATGGATTCTGTTGATCACGCTGTATTAGGATCATGGCTTGAACAACTGCAGCTTGATAATGTTGTGGCTCAGCAAAATTAG 2091 0.4472 MMNHLTVDTEYSFVSLLELAANNDVEGFKRMIERDPSCVDEIGLWYSRPKGSKQIVNEHRTPLMVAATYGSIDVMKLILSLSDYHVNKPCGLDKCTALHCAASGGAVNAVDVVKLLLAEGADPNSVDGNGHRPVDVIVVPPKLDFVKSSLEELLQTKDSTAGCGLRVITDPSNTYSPPLSASPENGSPSAPDLQLKSKLNDVPFSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCDYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSAMDFAAAMSLLPGSPSAMSVMSPSPFTPPMSPSANGMSYSSVAWPQPNVPALHLPGSNLHSSRLRSSFNARDIPGDNFDLLHDFDVQRQQHFNELSCLSQQPMNSNTINRSGRMKTLTPSNLDDLFSAESSSPRFADPALASAVFSPTHKSAVLNQFQQQQSLLSPVNTNFSSQNVDHPLFQASFGVQPSGRMSPRNVEPISPMSSRISMLAQREKQQQFRSLSSRELGSAAAGSTINSLSEWGSSDGTLDWAVSADELGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEMKEKLATTVPSAVEAGSSIQGSNISTQMDSVDHAVLGSWLEQLQLDNVVAQQN 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1187g00002 696 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Gabi1187g00002 696 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Gabi1187g00002 696 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Gabi1187g00002 696 MobiDBLite consensus disorder prediction 174 195 - -
Gabi1187g00002 696 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Gabi1187g00002 696 PRINTS Ankyrin repeat signature 112 126 IPR002110 GO:0005515
Gabi1187g00002 696 PRINTS Ankyrin repeat signature 59 74 IPR002110 GO:0005515
Gabi1187g00002 696 SMART ANK_2a 93 125 IPR002110 GO:0005515
Gabi1187g00002 696 SMART ANK_2a 11 40 IPR002110 GO:0005515
Gabi1187g00002 696 SMART ANK_2a 58 88 IPR002110 GO:0005515
Gabi1187g00002 696 PANTHER UNKEMPT FAMILY MEMBER 18 640 IPR045234 -
Gabi1187g00002 696 SUPERFAMILY Ankyrin repeat 16 150 IPR036770 -
Gabi1187g00002 696 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Gabi1187g00002 696 Pfam Ankyrin repeats (3 copies) 43 127 IPR002110 GO:0005515
Gabi1187g00002 696 Gene3D - 8 152 IPR036770 -
Gabi1187g00002 696 Gene3D - 272 334 - -
Gabi1187g00002 696 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1187g00002 Gabi-Chr1187 15412 18539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1187g00002 10 689 C2H2 Transcription Factor Family AT5G12850 53.399 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi1187g00002 Ank_2 3.4e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1187g00002 - - gmx:100813554 1143.26