Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1175g00022 ATGGGTGGTTGCTTTAGCAATAGGAGGATTAAGGGTGTGAGCCCTTCTTCCATTACAGGGTTCACTTCTAGTTCTAGAAGTGTACGTGTAAACGTAAGCAGGAGGAGTGGCCATGACATCAGCTCCTCAAATAATAGCAGCAGTAATTCATCATCAGCCTCCATATCTGTCACTACTACTTCTAGAAGTGACGATGAGATCTTGCAGCAATCTTCCAATTTGAAAAGCTTCAGCTACAGTGAACTAAGAGCAGCCACAAGAAATTTCCGCCGAGATAGTGTCTTAGGGCAGGGTGGATTTGGTTCTGTTTTTAAGGGCTGGATTGATGAGCATTCACTTGCTCCTACCAAACCAGGAATCGGCATGATTGTTGCTGTAAAGAGGCTTAACCAAGAGGGCTTCCAGGGTCACAAAGAATGGTTGGCTGAAATCAACTATCTTGGGCATCTGCAGCATCCTAATCTTGTCAAGTTAATAGGATACTGCTTCGAGGATCAGCATCGGCTTCTGGTTTATGAATTTATGCCTAAGGGCAGCATGGACAATCATCTCTTCAGAAGAGGTTCTTATTATCAGTCATTCTCTTGGAGTTTACGATTGGAAATAGCCCTTGAGGCTGCAAGGTGTCTCGCTTTTCTCCATAGTACAGAACCTAAAGTCATATACCGTGACTTTAAAACTTCAAATATCCTACTTGATGCTAACTATAAGCCCAAACTCTCTGATTTTGGGTTGGCCAGAGATGGGCCAACTGGTGATAAAACCCATGTCTCTACTAGGGTCATCGGAACCCGTGGATATGTGGCACCGGAGTATCTTGCAACAGGTCATCTCACTGCAAAGAGTGATGTATATAGTTTCGGAGTAGTTCTTCTCGAAATAATATCAGGAAGACGAGCTATAGACAATAACAAACCACCTGGAGAACATAACCTAGTTGAATGGGCCAAACCTTACCTATCCAACAAACGCCGAGTTTTTCGAGTAATGGATCCGCGTCTTGAGGGACAATATTCCCATACTCGAGCTCAAGCAGCAGCCACACTTGCTTTGCAATGTCTTGCTGCAGTACCTAAAAGCAGGCCAAATATGGATGAAGTGGTAAGAGCATTAGAGCTGCTTCAGGAACCAAAGGACATGCAGAAAAAAAATTGTCTTCAGAAAGAGCATCGCGAACGCAGTTCTGCACTCGGCCATCCCAACGGCCGCCCTACTGCTGACAAAGGTAGTGCAGATGCTCCCAGAAAGGCTTCTGCTTATCCTAGGCCTGAGTTTTGTGATGTGGCCAGTTGTTGTAGGAAGAACGTAAAAAGTTCAGAGATATAG 1326 0.4465 MGGCFSNRRIKGVSPSSITGFTSSSRSVRVNVSRRSGHDISSSNNSSSNSSSASISVTTTSRSDDEILQQSSNLKSFSYSELRAATRNFRRDSVLGQGGFGSVFKGWIDEHSLAPTKPGIGMIVAVKRLNQEGFQGHKEWLAEINYLGHLQHPNLVKLIGYCFEDQHRLLVYEFMPKGSMDNHLFRRGSYYQSFSWSLRLEIALEAARCLAFLHSTEPKVIYRDFKTSNILLDANYKPKLSDFGLARDGPTGDKTHVSTRVIGTRGYVAPEYLATGHLTAKSDVYSFGVVLLEIISGRRAIDNNKPPGEHNLVEWAKPYLSNKRRVFRVMDPRLEGQYSHTRAQAAATLALQCLAAVPKSRPNMDEVVRALELLQEPKDMQKKNCLQKEHRERSSALGHPNGRPTADKGSADAPRKASAYPRPEFCDVASCCRKNVKSSEI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1175g00022 441 MobiDBLite consensus disorder prediction 16 66 - -
Gabi1175g00022 441 SUPERFAMILY Protein kinase-like (PK-like) 64 379 IPR011009 -
Gabi1175g00022 441 Pfam Protein tyrosine and serine/threonine kinase 92 371 IPR001245 GO:0004672|GO:0006468
Gabi1175g00022 441 Gene3D Transferase(Phosphotransferase) domain 1 175 397 - -
Gabi1175g00022 441 ProSitePatterns Protein kinases ATP-binding region signature. 95 127 IPR017441 GO:0005524
Gabi1175g00022 441 FunFam Serine/threonine-protein kinase BIK1 56 174 - -
Gabi1175g00022 441 MobiDBLite consensus disorder prediction 379 397 - -
Gabi1175g00022 441 ProSiteProfiles Protein kinase domain profile. 89 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1175g00022 441 PANTHER OS01G0588500 PROTEIN-RELATED 49 375 - -
Gabi1175g00022 441 MobiDBLite consensus disorder prediction 379 420 - -
Gabi1175g00022 441 FunFam Serine/threonine-protein kinase PBS1 175 390 - -
Gabi1175g00022 441 Gene3D Phosphorylase Kinase; domain 1 63 174 - -
Gabi1175g00022 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1175g00022 Gabi-Chr1175 205713 207643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1175g00022 31 379 Glycoside Hydrolase AT3G07070 44.857 3.96e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi1175g00022 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1175g00022 - - gmx:100819620 602.438