Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1175g00013 ATGGAATCTGGACGACTTTTCTTTGACACTTCCGCTTGTCGCGGGAACAACATCCTCTTCCTCGGAAATGCCGATCTCGATTTTCGAGGAAGATCGATGATGAGCATGGAGGAAGGCTCAAAGAGGCGACCTTTCTTCAGTTCACCGGATGAACTTTTTGATGAGGAATACTACGAGGAGCAGTTGCCGGAGAAGAAACGCCGCCTCACTTCCGAGCAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGACCCAGTTGGCCAAGAAGCTGGGGTTGCAGCCTAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAGCAACTTGAAAGGGATTATGATGTTCTCAAGTCTTCCTATGATTCCCTACTTTCAACGCATGATTCCATTACGAAGGAGAATGAGAAACTAAAATCTGAGGTGGTTTCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGATGCCTGGAGAACCATTATTAGAAAAGAAAGCTGATCCACTTCAAGTGGATATAGCTCAAATTTTCAGATTGAAGGCAGAGGACCACCTGAGTACTGGAAGTGTTGGAAGTGCAGTGGTGGACGAGGGTAGTCCCCAACTTGTTGTTGACAGTGTTGATTCATACTTTCCAGCTGACAATTATGGTGGATGTGTGGTCCCACTTGAAAGGGTTCAGTCAGAGGAGGAGGATGGCAGTGATGATGGGAGGAGTTACTTAGATGTGTTTGTGGCACATGAAACTGACCACCCAAACCATGAGGAAGGAGAGGCATTGGCTTGGTGGGGTAATATGTATTATGCTCCATAA 849 0.4711 MESGRLFFDTSACRGNNILFLGNADLDFRGRSMMSMEEGSKRRPFFSSPDELFDEEYYEEQLPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTHDSITKENEKLKSEVVSLNEKLQVQAKEMPGEPLLEKKADPLQVDIAQIFRLKAEDHLSTGSVGSAVVDEGSPQLVVDSVDSYFPADNYGGCVVPLERVQSEEEDGSDDGRSYLDVFVAHETDHPNHEEGEALAWWGNMYYAP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1175g00013 282 Gene3D - 58 127 - -
Gabi1175g00013 282 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Gabi1175g00013 282 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355|GO:0043565
Gabi1175g00013 282 Coils Coil 133 167 - -
Gabi1175g00013 282 SMART HOX_1 63 124 IPR001356 GO:0003677
Gabi1175g00013 282 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Gabi1175g00013 282 SUPERFAMILY Homeodomain-like 59 122 IPR009057 -
Gabi1175g00013 282 CDD homeodomain 65 121 IPR001356 GO:0003677
Gabi1175g00013 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 205 IPR045224 GO:0003700
Gabi1175g00013 282 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
Gabi1175g00013 282 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Gabi1175g00013 282 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Gabi1175g00013 282 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1175g00013 Gabi-Chr1175 85616 88544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1175g00013 1 276 Homeobox Transcription Factor Family AT3G01470 60.777 1.58e-104 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi1175g00013 Homeodomain 4.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1175g00013 K09338 - gmx:100797836 473.396