Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1175g00012 ATGATCATGGAACTCAACGATTCCACCGGCGGCGACCACAACAACAACGCGCCGCCGCCGCCGCTTCAGCAGCAGCAGCAAGACTCTCGCTCTGGTCTTGGAATCGACCTCAACGAGATCCCTTCCCCTTCTTCTTCCTTCGCGGAAACCCTACCGGACTGCGCCGTCGACATCGTCCGCGCCTACCACGAGAACCCCGCCCCTCCTCCCGGCGGACCCGCCAACCTCCCCCGAGGCTCCCCTCCCTGCGTCGCCTGCGGAAAGCCCGGCGGCGGCGGCGGAAGCCACGTCGTCTGTGACGGCTGCGAGCGCTGCTTCCACTTGGCCTGCGCCGGGATTCGCGGCGGTGGTCGCCAGGTAGCGAACATCAGCGAGTGGGTGTGCGGCGAGTGTGTCTCCGGCGGGGTGAAGAGTAAGCGGTGGCCGTTGGGTGTCAAGTCCAAGCAGCTTCTTGATATTAACGCTTCACCGCCCAGTGATGCCGACGGTGACGGTGGTGGTGAGGAGTTGCAGGATTTGAGAAAGCACACTCCGGGTGATAATTCTTTTGGTGCCAATCCATTTGGTGCCCCAGTGACCTATTCAAACTTCTACAACGGGAGTGCTTTTGGCTTCCAAAAGGCATCTGGAGTTGTGACACATGCTGTTAGAGTGGGTTTTGAGGATATATTGAATCATACCCAGTCGATGAGTAAAAGCTTTGAGGAGGAAGGTTGGCGAGTGGAATTTAGACAATCACTGAGCAGCTCTGAATTGTATGCAGTTTACTGTGCGCCGGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATCTGGGTCTAACTTCTGGCTACAATTCTATGGAATCTGAAATAAGAAATGAGAGGTCTCTCCCTTCTGTAGGTGGGCCTCACCTATGCAGAAAAAGAAAGTCAACAAGAACTCCAGTAGCCAATGGTTTTGCTGAAAAGTGGGGAACTTTGACAAATAGTAATTGCAAGGATCTTCCTTCTGATTGTTTAGGTGTGGAATGTGCTAATGCTCGGGGGAATATCCTAGAAGTTGCAGAAATTGGAAGAAAAGAGGATGATCGCTCTGGCCCTCAGCAATCTGCTGATGGACTTCCTTTACAGTTCAAGGACTTTTTTGTTCTTTCTTTGGGAAAACTTGATGGTAGACCTTCATATTATGATGTTAACCTTATCTGTCCTATAGGTTATAAATCCTGTTGGCATGATAAGATTACTGGCTCTCTTTTTACATGTGAAGTTCTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCAGAAGGTGTTCCTGTTCAAAATTTCCTGTTCCAGTTGGGTCGACCATCCTCTCAATGTCAAGTCTTTGTCAATTTGTGAGTCAAACGAATGAAGGTGAGAGAAAGACGATTGATAGTATGGATTTAGATGGTGATGAAAGTATCCAGATGATCCTTTTAGACCCTTGCGTTCCAACGGAAAATGATGTCTTGAGTTGTCTTGCTAGTTGCTCGAATGAAGCATGTGATACTCACACATCAGATGTATTACAGCCTGTTGCTGGTTCAGTGCAAGATAATACCAGGAATTCATCAGCTGATAACTTGGGGTTTATTGATGGAATTGGTGAAATTTTGGTGGAAGAGCGGTCATCGTCCTCAGCATGGAAAGTTATTTCCCAAAAGTTAGTTAATGCTTGCAAGGATATCTGCAAGCAGAAAGGAGCTCTCAAGCTTTATTGTAAACATGTTGAAAATGAAACATGCTTCCATAAATGGGATATAAGGAATGGCAAAAGCAATATACACTTCACATCTTTGGATAAATTTTGTTGTTCACTTGGTTCGGTCAGCATCCCAGATGTAATTTATGCTTACAATGATCTGGAAAGTCTCTATGAAGGCTTAGGAAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTGGAACATCAGCCTGGTTTCCAAGACTCTCTTCAGTATAACATTCTAAATAGTAGAAGTAATAGCTCTTCATTGCCAACAGTAGAAAATGGTTTCCTAGAGGTTGAGTGGAGAGGTGGATCAAAATATCAGGAAGAAGAAGCAGTTCAGGGTTTATATAGGAGGCTCAAGAATGTGAGATTGACTGAAAAATGCATTAAGGAAGATCGTTGTCCACCTCCTGGGAAGCCAATATGCTCTAAAGCTCCTAGTGAACTTATTGGTGACATTTTTCAGGCTTGGGAGCTTTTAGAGAGATTTCATGAAATTCTGGACCTGAAAGAACCATTGTCATTGTATGAGCTAGAGAAGGAACTTATCAACCCTTGGTTTGATGGATTGGATTTTCTTGAGAAATCTGAGAGGGAAACAGATGGAAGTCAATTTTTAAGTTTGCAGGGAGCTGATAGTAATTGCAGACCAATATTGTCCCCAAGATGTGAAGCTGGACCATCAGGTTCCGCAGAAAGTTCCCATGCATTTATTCAAGTGGAAACGGAAGCAATGAAAGAGGCAGCTCAAGTTAAGCTTGCATCTTTCACCTATGCGAGATGCTTTGGGGTAGCGTTGACCAAGGCTCATAATTCATTGCTAAGAGTGCTAATAGGTGAACTGCAATCAAGGGTGGCTGCTCTGGTGGATCCAAATTCTGAACCTGGAGAGACACGAACAAGACGGGGAAGAAGGAAAGATATAGACTGTGCATTTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTATTAATGAATTGACTTGGCCAGAATTAGCTCGGAGATATGTCTTGGCTTTCTTATCAATGGATGGTAACCTTGAGTCTGCGGAAATTACTGCTCGTGAAAGTGGTAAAGTATTTCGCTGCTTAAGAGGCGATGGTGGTTTGCTATGTGGTTCCCTTACTGGTGTAGCTGGGATGGAAGCAGATGCACTGTTACTTGCGGAGGCCACAAAGAAAATATTTGGTTCTTTGAGCAGAGAAAATGATGCACTAACCATGGAAGAAGAGGAGTCTGATGCAAAGGGTGCATCTGAAAAAATTCTGGGGAATGATGGTATTATTCCTGAATGGGCGCAGGTGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTTATGAAGCTCTGGAAAAGAATCCACCAGAGTGGGCAAAGAAAATACTGGAGCATTCAATTAGTAAAGAAGTGTACAAGGGGAATGCATCTGGACCAACGAAGAAAGCAGTTCTTTCAGTGTTGGCTAATGTAAATGGTGAAGGATCGCAACAGAATCCCAATAAAGGAAGGAAAAAGAAGATTGTTGTATCTATTTCTGATATTATCATGAAACAATGTCGGATTGTATTACGTCGTGCAGCTGCTGCAGATGATTCAAAGGTTTTCTGTAATTTGCTGGGAAGAAAACTAATAAATTTTTCCGATAATGATGATGAAGGGCTTCTTGGACCCCCAGCTATGGTGGCCCGTCCTCTTGACTTCCGGACTGTTGACCTAAGGTTGGCTGCTGGATCTTATGGTGGATCTCATGAAGCTTTTCTGGAGGATGTTCGCGAGTTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGACTTAGTTGAACTGGCTGAAAAATTATCCCAGAATTTTGAATCGTTATATAATGACGAGGTTGTTACCCATGCCCAAAAATTTGTGGAGTATGCTAAATTGGGATGCTTAAGTGCAGAAATGAGAAAAGAAGTTCATGATTTTATTGTGTCAACGAGTGAGATTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGACAGGGATGATGACAGTGTTCTACTATGCGATACTTGTGATGCTGAGTATCATACGTATTGCTTGAATCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCTTCTTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTATACAGATTATTGGAAAACATAAAAGTAAAAAATTCCAGGGAGAAGTTAATTCTCTTTACTTGGAAGCTCTAACTCATTTATCAGCTGTACTCGAAGAAAAAGAATACTGGGAGTTCAGTGTGGGCGAGAGAACTTTCCTTATCAAGTTTTTAAGCGATGAGTTGCTTAACTCTTCCCTGCTACGCCAGCACCTTGAGCAATGTGCAGAGTTGTCTGTTGAGTTACATCAGAAATTGCGTGCACTTTCTGTAGAGTGGAAAAGCCTGAAAACTAAAGAAGATATTTTATCAACAAAAGCTGCAAAAATTGATACATTCTCACTAAATACCGCTGGAGAAGTTGGTCTTAAGGAAGGATTTACAGCTTTGTTCTCAAATAGTGGTAAGTGTCTGGGGCAGCCTCAAACTGTAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGTGACTGCCAAAGAGAAGTACAGGTTCAATAGTGTTGATAAAACTGTACCAGTGACAAATTCAGATTCTGATAGCCAAAATCTGAATTCCATAGATTTAGAGGGACAACTTGGGAGTGCCTCTGTGGCTGTGGAGTCTCAATGTACTGATAGATCCCCCAAGTCTTTTGCATCACCAAATCATCTGCATGAAGAAATAAATGGTTCTGGTGGAGCAGCTCATATCCAGGTTAACCAACAGAAATGTGAGGGAAGGGACATCTCTACTCTTGTGACATATCAGCAAGAACAATGTGTGCCTGTTGATGTTCCTCAGATTGCTATGAATGAGTCAGAACCCTTCCACCTCGAGCTCAGTGCCGTCAAGCGTAATATTTCATTACTGCAGGATTCCATAACTAGCGTAGGATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATATTTGGGCATTGATTCTATTGGTCGACTGTACTGGGCTTCGGCTATGCCCAGGGGACGTTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTGCATGGAAAAGGAAGGGAAGTTAGCAGAGACACCGTGGAGAAGTTTCCTGTTCTGCAGCGTTGTGCACTATCTGACAAGGATAACTGTAAGATGTTGGGGGTGACCAAAGACTCCTCTTCTTTAATGTCTCAACCAAGTGATGCTTTGGGCATTTGTTCACCATGGATTGCTTATGAAACTGATGCAGAAATTGAAGAGATCTTATGTTGGCTGAATGATAATGACCCTAAAGAAAGAGAACTGAAAGATTCCATTATGCTGGGGCCAAAATCAAGATTTCAGGAGTTTATTAATGCACAGACTGAAGTTCAGGCTGAGGACCAAGGACCTATTTCTATGCCAGGAAATAGTGAGAAAACATTATCTAATTCTCTTGTTACAAAGGCGACGTCCTTGCTGGAAAAGAAATATGGTTCCTTTTTTGAGTGGGATACCATTGAGGTGTTGAAGAAGCGAAGCAAAAAGGCCAGAACAACTAATGATGAAAAAATGTATAGGTGTGAGTGCCTAGAACCCATATGGCCTTGTAGGAAACACTGCATGTATTGCCACAAAACTTTTTCAAGTGATGTTGAATTGGAGGGACACAATGATGGCAAATGTAATGCAGGTCTGATGATGACCTTGGAGAAGAATAAGGATAAAAATGGATCTTCCAAAGGAAAAGGGAACTCAAAATGTGATACCTCACATGGAAAATTCAAAGGTGGTGCAGAAACAGCTGGATCGTCAATTAATGAAAATTATAAGCGTTGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAACTTTGAAGATATATGTTCCAAGTTTGTGACAAATGATTCCAACAAGGAACTTGTCAGAGAAATAGGTCTTATTGGTTCAGATGGTATTCCATCCTTTGTTCCTTCCATCTCTCCTTTTGTTAGTGAGTATACGCTATTCTCAGCTCAAAAGGATGATAGCATTGATGGTGGTGCATCCAAAGCTTCAGAGAGCCGGGTTTTTCAAGGAAGCAATGATGGAGCTGGCATATGTCATGACCTTAAATCCAGCATATCTCCTGGAAGGTTAGCTGCAAATGAAAGCAATAAAGCAGGACAATCCAACAAATCATCGTTGGGAGAACAAAGAGATGGAAAGTTCTCTTTTTGTAGTCCTGCTTCAGATATGGTAGTTGATGGCTGCTGTGTGGTCCCTTCATCTTCGTTGAGACCATTAGTTGGAAAAGTTTCTCATATTTTAAGGCAACTGAAGATTAATCTACTTGATATGGATGCTGCACTCCCAAAAGTAGTTCTGAGACCATCAAGGGCACAGTTGGATAGAAGACAGGCCTGGCGTGCATTTGTTAAATCTGCAGAGACTATATATGAGATGGTTCAGGCAACAATTACACTGGAGGATATGATTAAGACAGAGTACTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCTGCTGCTGCGAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCCCTTGATTCAGCCATTATATATGAGAAAATGCCCAATTCAAGTTTTACTGACAGCTCTGAACCTTCTGCGATAGCAGAACAGAAACAGCTGATCACGGTGGATGCAGAGAAATCTAAAGCAAGCCGGAAATCGAACAGGAAAAGGAGGGAACCGGATGGTTGA 6642 0.4321 MIMELNDSTGGDHNNNAPPPPLQQQQQDSRSGLGIDLNEIPSPSSSFAETLPDCAVDIVRAYHENPAPPPGGPANLPRGSPPCVACGKPGGGGGSHVVCDGCERCFHLACAGIRGGGRQVANISEWVCGECVSGGVKSKRWPLGVKSKQLLDINASPPSDADGDGGGEELQDLRKHTPGDNSFGANPFGAPVTYSNFYNGSAFGFQKASGVVTHAVRVGFEDILNHTQSMSKSFEEEGWRVEFRQSLSSSELYAVYCAPDGKIFDSVYEVACYLGLTSGYNSMESEIRNERSLPSVGGPHLCRKRKSTRTPVANGFAEKWGTLTNSNCKDLPSDCLGVECANARGNILEVAEIGRKEDDRSGPQQSADGLPLQFKDFFVLSLGKLDGRPSYYDVNLICPIGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSKFPVPVGSTILSMSSLCQFVSQTNEGERKTIDSMDLDGDESIQMILLDPCVPTENDVLSCLASCSNEACDTHTSDVLQPVAGSVQDNTRNSSADNLGFIDGIGEILVEERSSSSAWKVISQKLVNACKDICKQKGALKLYCKHVENETCFHKWDIRNGKSNIHFTSLDKFCCSLGSVSIPDVIYAYNDLESLYEGLGKWLEQDRFGLDVEFVQEVLEHQPGFQDSLQYNILNSRSNSSSLPTVENGFLEVEWRGGSKYQEEEAVQGLYRRLKNVRLTEKCIKEDRCPPPGKPICSKAPSELIGDIFQAWELLERFHEILDLKEPLSLYELEKELINPWFDGLDFLEKSERETDGSQFLSLQGADSNCRPILSPRCEAGPSGSAESSHAFIQVETEAMKEAAQVKLASFTYARCFGVALTKAHNSLLRVLIGELQSRVAALVDPNSEPGETRTRRGRRKDIDCAFPAKRTKLNMLPINELTWPELARRYVLAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDALTMEEEESDAKGASEKILGNDGIIPEWAQVLEPVRKLPTNVGTRIRKCVYEALEKNPPEWAKKILEHSISKEVYKGNASGPTKKAVLSVLANVNGEGSQQNPNKGRKKKIVVSISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINFSDNDDEGLLGPPAMVARPLDFRTVDLRLAAGSYGGSHEAFLEDVRELWNNVRVAFGDQPDLVELAEKLSQNFESLYNDEVVTHAQKFVEYAKLGCLSAEMRKEVHDFIVSTSEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERIQIIGKHKSKKFQGEVNSLYLEALTHLSAVLEEKEYWEFSVGERTFLIKFLSDELLNSSLLRQHLEQCAELSVELHQKLRALSVEWKSLKTKEDILSTKAAKIDTFSLNTAGEVGLKEGFTALFSNSGKCLGQPQTVVDNPSNFGVFVDSLPSEVTAKEKYRFNSVDKTVPVTNSDSDSQNLNSIDLEGQLGSASVAVESQCTDRSPKSFASPNHLHEEINGSGGAAHIQVNQQKCEGRDISTLVTYQQEQCVPVDVPQIAMNESEPFHLELSAVKRNISLLQDSITSVGSQLLKLSVRREYLGIDSIGRLYWASAMPRGRSRIVVDASAALLHGKGREVSRDTVEKFPVLQRCALSDKDNCKMLGVTKDSSSLMSQPSDALGICSPWIAYETDAEIEEILCWLNDNDPKERELKDSIMLGPKSRFQEFINAQTEVQAEDQGPISMPGNSEKTLSNSLVTKATSLLEKKYGSFFEWDTIEVLKKRSKKARTTNDEKMYRCECLEPIWPCRKHCMYCHKTFSSDVELEGHNDGKCNAGLMMTLEKNKDKNGSSKGKGNSKCDTSHGKFKGGAETAGSSINENYKRCSRLIKFSNEESTCPFNFEDICSKFVTNDSNKELVREIGLIGSDGIPSFVPSISPFVSEYTLFSAQKDDSIDGGASKASESRVFQGSNDGAGICHDLKSSISPGRLAANESNKAGQSNKSSLGEQRDGKFSFCSPASDMVVDGCCVVPSSSLRPLVGKVSHILRQLKINLLDMDAALPKVVLRPSRAQLDRRQAWRAFVKSAETIYEMVQATITLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAIIYEKMPNSSFTDSSEPSAIAEQKQLITVDAEKSKASRKSNRKRREPDG 2213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1175g00012 2213 Pfam PHD-finger 1266 1312 IPR019787 -
Gabi1175g00012 2213 Pfam PHD-finger 83 132 IPR019787 -
Gabi1175g00012 2213 Gene3D - 370 479 - -
Gabi1175g00012 2213 MobiDBLite consensus disorder prediction 1870 1888 - -
Gabi1175g00012 2213 MobiDBLite consensus disorder prediction 8 48 - -
Gabi1175g00012 2213 SUPERFAMILY Bromodomain 1101 1221 IPR036427 GO:0005515
Gabi1175g00012 2213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1217 1326 IPR013083 -
Gabi1175g00012 2213 ProSiteProfiles FYR domain FYRN motif profile. 369 422 IPR003888 GO:0005634
Gabi1175g00012 2213 ProSiteProfiles Zinc finger PHD-type profile. 1264 1314 IPR019787 -
Gabi1175g00012 2213 ProSiteProfiles Zinc finger PHD-type profile. 80 134 IPR019787 -
Gabi1175g00012 2213 MobiDBLite consensus disorder prediction 1 48 - -
Gabi1175g00012 2213 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1346 1390 IPR028942 -
Gabi1175g00012 2213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 132 IPR013083 -
Gabi1175g00012 2213 SUPERFAMILY FYVE/PHD zinc finger 80 143 IPR011011 -
Gabi1175g00012 2213 MobiDBLite consensus disorder prediction 2013 2034 - -
Gabi1175g00012 2213 MobiDBLite consensus disorder prediction 2192 2213 - -
Gabi1175g00012 2213 SUPERFAMILY FYVE/PHD zinc finger 1253 1316 IPR011011 -
Gabi1175g00012 2213 Gene3D - 1093 1216 IPR036427 GO:0005515
Gabi1175g00012 2213 CDD PHD1_Lid2p_like 1266 1311 - -
Gabi1175g00012 2213 ProSitePatterns Zinc finger PHD-type signature. 1267 1311 IPR019786 -
Gabi1175g00012 2213 MobiDBLite consensus disorder prediction 2173 2213 - -
Gabi1175g00012 2213 MobiDBLite consensus disorder prediction 152 178 - -
Gabi1175g00012 2213 MobiDBLite consensus disorder prediction 1869 1888 - -
Gabi1175g00012 2213 ProSitePatterns Zinc finger PHD-type signature. 83 131 IPR019786 -
Gabi1175g00012 2213 ProSiteProfiles Bromodomain profile. 1157 1205 IPR001487 GO:0005515
Gabi1175g00012 2213 PANTHER OS02G0192300 PROTEIN 23 2209 - -
Gabi1175g00012 2213 SMART PHD_3 1266 1312 IPR001965 -
Gabi1175g00012 2213 SMART PHD_3 82 132 IPR001965 -
Gabi1175g00012 2213 CDD PHD_SF 83 131 - -
Gabi1175g00012 2213 Pfam Methyl-CpG binding domain 228 279 IPR001739 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1175g00012 Gabi-Chr1175 69135 84357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1175g00012 26 2213 C2H2 Transcription Factor Family AT3G01460 45.281 0.0 1729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi1175g00012 MBD 1.4e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1175g00012 K22768 - gmx:100820223 3364.7