Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1175g00011 ATGATCATGGAACTCAACGATTCCACCGGCGGCGACCACAACAACAACGCGCCGCCGCCGCCGCTTCAGCAGCAGCAGCAAGACTCTCGCTCTGGTCTTGGAATCGACCTCAACGAGATCCCTTCCCCTTCTTCTTCCTTCGCGGAAACCCTACCGGACTGCGCCGTCGACATCGTCCGCGCCTACCACGAGAACCCCGCCCCTCCTCCCGGCGGACCCGCCAACCTCCCCCGAGGCTCCCCTCCCTGCGTCGCCTGCGGAAAGCCCGGCGGCGGCGGCGGAAGCCACGTCGTCTGTGACGGCTGCGAGCGCTGCTTCCACTTGGCCTGCGCCGGGATTCGCGGCGGTGGTCGCCAGGTAGCGAACATCAGCGAGTGGGTGTGCGGCGAGTGTGTCTCCGGCGGGGTGAAGAGTAAGCGGTGGCCGTTGGGTGTCAAGTCCAAGCAGCTTCTTGATATTAACGCTTCACCGCCCAGTGATGCCGACGGTGACGGTGGTGGTGAGGAGTTGCAGGATTTGAGAAAGCACACTCCGGGTGATAATTCTTTTGGTGCCAATCCATTTGGTGCCCCAGTGACCTATTCAAACTTCTACAACGGGAGTGCTTTTGGCTTCCAAAAGGCATCTGGAGTTGTGACACATGCTGTTAGAGTGGGTTTTGAGGATATATTGAATCATACCCAGTCGATGAGTAAAAGCTTTGAGGAGGCTCTTAGAGATTTTATATCTGAAAGGCGTGGTGTACTACAGGAAGGTTGGCGAGTGGAATTTAGACAATCACTGAGCAGCTCTGAATTGTATGCAGTTTACTGTGCGCCGGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATCTGGGTCTAACTTCTGGCTACAATTCTATGGAATCTGAAATAAGAAATGAGAGGTCTCTCCCTTCTGTAGGTGGGCCTCACCTATGCAGAAAAAGAAAGTCAACAAGAACTCCAGTAGCCAATGGTTTTGCTGAAAAGTGGGGAACTTTGACAAATAGTAATTGCAAGGATCTTCCTTCTGATTGTTTAGGTGTGGAATGTGCTAATGCTCGGGGGAATATCCTAGAAGTTGCAGAAATTGGAAGAAAAGAGGATGATCGCTCTGGCCCTCAGCAATCTGCTGATGGACTTCCTTTACAGTTCAAGGACTTTTTTGTTCTTTCTTTGGGAAAACTTGATGGTAGACCTTCATATTATGATGTTAACCTTATCTGTCCTATAGGTTATAAATCCTGTTGGCATGATAAGATTACTGGCTCTCTTTTTACATGTGAAGTTCTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCAGAAGGTGTTCCTGTTCAAAATTTCCTGTTCCAGTTGGGTCGACCATCCTCTCAATGTCAAGTCTTTGTCAATTTGTGAGTCAAACGAATGAAGGTGAGAGAAAGACGATTGATAGTATGGATTTAGATGGTGATGAAAGTATCCAGATGATCCTTTTAGACCCTTGCGTTCCAACGGAAAATGATGTCTTGAGTTGTCTTGCTAGTTGCTCGAATGAAGCATGTGATACTCACACATCAGATGTATTACAGCCTGTTGCTGGTTCAGTGCAAGATAATACCAGGAATTCATCAGCTGATAACTTGGGGTTTATTGATGGAATTGGTGAAATTTTGGTGGAAGAGCGGTCATCGTCCTCAGCATGGAAAGTTATTTCCCAAAAGTTAGTTAATGCTTGCAAGGATATCTGCAAGCAGAAAGGAGCTCTCAAGCTTTATTGTAAACATGTTGAAAATGAAACATGCTTCCATAAATGGGATATAAGGAATGGCAAAAGCAATATACACTTCACATCTTTGGATAAATTTTGTTGTTCACTTGGTTCGGTCAGCATCCCAGATGTAATTTATGCTTACAATGATCTGGAAAGTCTCTATGAAGGCTTAGGAAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTGGAACATCAGCCTGGTTTCCAAGACTCTCTTCAGTATAACATTCTAAATAGTAGAAGTAATAGCTCTTCATTGCCAACAGTAGAAAATGGTTTCCTAGAGGTTGAGTGGAGAGGTGGATCAAAATATCAGGAAGAAGAAGCAGTTCAGGGTTTATATAGGAGGCTCAAGAATGTGAGATTGACTGAAAAATGCATTAAGGAAGATCGTTGTCCACCTCCTGGGAAGCCAATATGCTCTAAAGCTCCTAGTGAACTTATTGGTGACATTTTTCAGGCTTGGGAGCTTTTAGAGAGATTTCATGAAATTCTGGACCTGAAAGAACCATTGTCATTGTATGAGCTAGAGAAGGAACTTATCAACCCTTGGTTTGATGGATTGGATTTTCTTGAGAAATCTGAGAGGGAAACAGATGGAAGTCAATTTTTAAGTTTGCAGGGAGCTGATAGTAATTGCAGACCAATATTGTCCCCAAGATGTGAAGCTGGACCATCAGGTTCCGCAGAAAGTTCCCATGCATTTATTCAAGTGGAAACGGAAGCAATGAAAGAGGCAGCTCAAGTTAAGCTTGCATCTTTCACCTATGCGAGATGCTTTGGGGTAGCGTTGACCAAGGCTCATAATTCATTGCTAAGAGTGCTAATAGGTGAACTGCAATCAAGGGTGGCTGCTCTGGTGGATCCAAATTCTGAACCTGGAGAGACACGAACAAGACGGGGAAGAAGGAAAGATATAGACTGTGCATTTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTATTAATGAATTGACTTGGCCAGAATTAGCTCGGAGATATGTCTTGGCTTTCTTATCAATGGATGGTAACCTTGAGTCTGCGGAAATTACTGCTCGTGAAAGTGGTAAAGTATTTCGCTGCTTAAGAGGCGATGGTGGTTTGCTATGTGGTTCCCTTACTGGTGTAGCTGGGATGGAAGCAGATGCACTGTTACTTGCGGAGGCCACAAAGAAAATATTTGGTTCTTTGAGCAGAGAAAATGATGCACTAACCATGGAAGAAGAGGAGTCTGATGCAAAGGGTGCATCTGAAAAAATTCTGGGGAATGATGGTATTATTCCTGAATGGGCGCAGGTGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTTATGAAGCTCTGGAAAAGAATCCACCAGAGTGGGCAAAGAAAATACTGGAGCATTCAATTAGTAAAGAAGTGTACAAGGGGAATGCATCTGGACCAACGAAGAAAGCAGTTCTTTCAGTGTTGGCTAATGTAAATGGTGAAGGATCGCAACAGAATCCCAATAAAGGAAGGAAAAAGAAGATTGTTGTATCTATTTCTGATATTATCATGAAACAATGTCGGATTGTATTACGTCGTGCAGCTGCTGCAGATGATTCAAAGGTTTTCTGTAATTTGCTGGGAAGAAAACTAATAAATTTTTCCGATAATGATGATGAAGGGCTTCTTGGACCCCCAGCTATGGTGGCCCGTCCTCTTGACTTCCGGACTGTTGACCTAAGGTTGGCTGCTGGATCTTATGGTGGATCTCATGAAGCTTTTCTGGAGGATGTTCGCGAGTTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGACTTAGTTGAACTGGCTGAAAAATTATCCCAGAATTTTGAATCGTTATATAATGACGAGGTTGTTACCCATGCCCAAAAATTTGTGGAGTATGCTAAATTGGGATGCTTAAGTGCAGAAATGAGAAAAGAAGTTCATGATTTTATTGTGTCAACGAGTGAGATTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGACAGGGATGATGACAGTGTTCTACTATGCGATACTTGTGATGCTGAGTATCATACGTATTGCTTGAATCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCTTCTTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTATACAGATTATTGGAAAACATAAAAGTAAAAAATTCCAGGGAGAAGTTAATTCTCTTTACTTGGAAGCTCTAACTCATTTATCAGCTGTACTCGAAGAAAAAGAATACTGGGAGTTCAGTGTGGGCGAGAGAACTTTCCTTATCAAGTTTTTAAGCGATGAGTTGCTTAACTCTTCCCTGCTACGCCAGCACCTTGAGCAATGTGCAGAGTTGTCTGTTGAGTTACATCAGAAATTGCGTGCACTTTCTGTAGAGTGGAAAAGCCTGAAAACTAAAGAAGATATTTTATCAACAAAAGCTGCAAAAATTGATACATTCTCACTAAATACCGCTGGAGAAGTTGGTCTTAAGGAAGGATTTACAGCTTTGTTCTCAAATAGTGGTAAGTGTCTGGGGCAGCCTCAAACTGTAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGTGACTGCCAAAGAGAAGTACAGGTTCAATAGTGTTGATAAAACTGTACCAGTGACAAATTCAGATTCTGATAGCCAAAATCTGAATTCCATAGATTTAGAGGGACAACTTGGGAGTGCCTCTGTGGCTGTGGAGTCTCAATGTACTGATAGATCCCCCAAGTCTTTTGCATCACCAAATCATCTGCATGAAGAAATAAATGGTTCTGGTGGAGCAGCTCATATCCAGGTTAACCAACAGAAATGTGAGGGAAGGGACATCTCTACTCTTGTGACATATCAGCAAGAACAATGTGTGCCTGTTGATGTTCCTCAGATTGCTATGAATGAGTCAGAACCCTTCCACCTCGAGCTCAGTGCCGTCAAGCGTAATATTTCATTACTGCAGGATTCCATAACTAGCGTAGGATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATATTTGGGCATTGATTCTATTGGTCGACTGTACTGGGCTTCGGCTATGCCCAGGGGACGTTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTGCATGGAAAAGGAAGGGAAGTTAGCAGAGACACCGTGGAGAAGTTTCCTGTTCTGCAGCGTTGTGCACTATCTGACAAGGATAACTGTAAGATGTTGGGGGTGACCAAAGACTCCTCTTCTTTAATGTCTCAACCAAGTGATGCTTTGGGCATTTGTTCACCATGGATTGCTTATGAAACTGATGCAGAAATTGAAGAGATCTTATGTTGGCTGAATGATAATGACCCTAAAGAAAGAGAACTGAAAGATTCCATTATGCTGGGGCCAAAATCAAGATTTCAGGAGTTTATTAATGCACAGACTGAAGTTCAGGCTGAGGACCAAGGACCTATTTCTATGCCAGGAAATAGTGAGAAAACATTATCTAATTCTCTTGTTACAAAGGCGACGTCCTTGCTGGAAAAGAAATATGGTTCCTTTTTTGAGTGGGATACCATTGAGGTGTTGAAGAAGCGAAGCAAAAAGGCCAGAACAACTAATGATGAAAAAATGTATAGGTGTGAGTGCCTAGAACCCATATGGCCTTGTAGGAAACACTGCATGTATTGCCACAAAACTTTTTCAAGTGATGTTGAATTGGAGGGACACAATGATGGCAAATGTAATGCAGGTCTGATGATGACCTTGGAGAAGAATAAGGATAAAAATGGATCTTCCAAAGGAAAAGGGAACTCAAAATGTGATACCTCACATGGAAAATTCAAAGGTGGTGCAGAAACAGCTGGATCGTCAATTAATGAAAATTATAAGCGTTGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAACTTTGAAGATATATGTTCCAAGTTTGTGACAAATGATTCCAACAAGGAACTTGTCAGAGAAATAGGTCTTATTGGTTCAGATGGTATTCCATCCTTTGTTCCTTCCATCTCTCCTTTTGTTAGTGAGTATACGCTATTCTCAGCTCAAAAGGATGATAGCATTGATGGTGGTGCATCCAAAGCTTCAGAGAGCCGGGTTTTTCAAGGAAGCAATGATGGAGCTGGCATATGTCATGACCTTAAATCCAGCATATCTCCTGGAAGGTTAGCTGCAAATGAAAGCAATAAAGCAGGACAATCCAACAAATCATCGTTGGGAGAACAAAGAGATGGAAAGTTCTCTTTTTGTAGTCCTGCTTCAGATATGGTAGTTGATGGCTGCTGTGTGGTCCCTTCATCTTCGTTGAGACCATTAGTTGGAAAAGTTTCTCATATTTTAAGGCAACTGAAGATTAATCTACTTGATATGGATGCTGCACTCCCAAAAGTAGTTCTGAGACCATCAAGGGCACAGTTGGATAGAAGACAGGCCTGGCGTGCATTTGTTAAATCTGCAGAGACTATATATGAGATGGTTCAGGCAACAATTACACTGGAGGATATGATTAAGACAGAGTACTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCTGCTGCTGCGAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCCCTTGATTCAGCCATTATATATGAGAAAATGCCCAATTCAAGTTTTACTGACAGCTCTGAACCTTCTGCGATAGCAGAACAGAAACAGCTGATCACGGTGGATGCAGAGAAATCTAAAGCAAGCCGGAAATCGAACAGGAAAAGGAGGGAACCGGATGGTTGA 6684 0.4319 MIMELNDSTGGDHNNNAPPPPLQQQQQDSRSGLGIDLNEIPSPSSSFAETLPDCAVDIVRAYHENPAPPPGGPANLPRGSPPCVACGKPGGGGGSHVVCDGCERCFHLACAGIRGGGRQVANISEWVCGECVSGGVKSKRWPLGVKSKQLLDINASPPSDADGDGGGEELQDLRKHTPGDNSFGANPFGAPVTYSNFYNGSAFGFQKASGVVTHAVRVGFEDILNHTQSMSKSFEEALRDFISERRGVLQEGWRVEFRQSLSSSELYAVYCAPDGKIFDSVYEVACYLGLTSGYNSMESEIRNERSLPSVGGPHLCRKRKSTRTPVANGFAEKWGTLTNSNCKDLPSDCLGVECANARGNILEVAEIGRKEDDRSGPQQSADGLPLQFKDFFVLSLGKLDGRPSYYDVNLICPIGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSKFPVPVGSTILSMSSLCQFVSQTNEGERKTIDSMDLDGDESIQMILLDPCVPTENDVLSCLASCSNEACDTHTSDVLQPVAGSVQDNTRNSSADNLGFIDGIGEILVEERSSSSAWKVISQKLVNACKDICKQKGALKLYCKHVENETCFHKWDIRNGKSNIHFTSLDKFCCSLGSVSIPDVIYAYNDLESLYEGLGKWLEQDRFGLDVEFVQEVLEHQPGFQDSLQYNILNSRSNSSSLPTVENGFLEVEWRGGSKYQEEEAVQGLYRRLKNVRLTEKCIKEDRCPPPGKPICSKAPSELIGDIFQAWELLERFHEILDLKEPLSLYELEKELINPWFDGLDFLEKSERETDGSQFLSLQGADSNCRPILSPRCEAGPSGSAESSHAFIQVETEAMKEAAQVKLASFTYARCFGVALTKAHNSLLRVLIGELQSRVAALVDPNSEPGETRTRRGRRKDIDCAFPAKRTKLNMLPINELTWPELARRYVLAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDALTMEEEESDAKGASEKILGNDGIIPEWAQVLEPVRKLPTNVGTRIRKCVYEALEKNPPEWAKKILEHSISKEVYKGNASGPTKKAVLSVLANVNGEGSQQNPNKGRKKKIVVSISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINFSDNDDEGLLGPPAMVARPLDFRTVDLRLAAGSYGGSHEAFLEDVRELWNNVRVAFGDQPDLVELAEKLSQNFESLYNDEVVTHAQKFVEYAKLGCLSAEMRKEVHDFIVSTSEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERIQIIGKHKSKKFQGEVNSLYLEALTHLSAVLEEKEYWEFSVGERTFLIKFLSDELLNSSLLRQHLEQCAELSVELHQKLRALSVEWKSLKTKEDILSTKAAKIDTFSLNTAGEVGLKEGFTALFSNSGKCLGQPQTVVDNPSNFGVFVDSLPSEVTAKEKYRFNSVDKTVPVTNSDSDSQNLNSIDLEGQLGSASVAVESQCTDRSPKSFASPNHLHEEINGSGGAAHIQVNQQKCEGRDISTLVTYQQEQCVPVDVPQIAMNESEPFHLELSAVKRNISLLQDSITSVGSQLLKLSVRREYLGIDSIGRLYWASAMPRGRSRIVVDASAALLHGKGREVSRDTVEKFPVLQRCALSDKDNCKMLGVTKDSSSLMSQPSDALGICSPWIAYETDAEIEEILCWLNDNDPKERELKDSIMLGPKSRFQEFINAQTEVQAEDQGPISMPGNSEKTLSNSLVTKATSLLEKKYGSFFEWDTIEVLKKRSKKARTTNDEKMYRCECLEPIWPCRKHCMYCHKTFSSDVELEGHNDGKCNAGLMMTLEKNKDKNGSSKGKGNSKCDTSHGKFKGGAETAGSSINENYKRCSRLIKFSNEESTCPFNFEDICSKFVTNDSNKELVREIGLIGSDGIPSFVPSISPFVSEYTLFSAQKDDSIDGGASKASESRVFQGSNDGAGICHDLKSSISPGRLAANESNKAGQSNKSSLGEQRDGKFSFCSPASDMVVDGCCVVPSSSLRPLVGKVSHILRQLKINLLDMDAALPKVVLRPSRAQLDRRQAWRAFVKSAETIYEMVQATITLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAIIYEKMPNSSFTDSSEPSAIAEQKQLITVDAEKSKASRKSNRKRREPDG 2227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1175g00011 2227 MobiDBLite consensus disorder prediction 152 182 - -
Gabi1175g00011 2227 ProSiteProfiles Zinc finger PHD-type profile. 1278 1328 IPR019787 -
Gabi1175g00011 2227 SUPERFAMILY Bromodomain 1115 1235 IPR036427 GO:0005515
Gabi1175g00011 2227 ProSiteProfiles FYR domain FYRN motif profile. 383 436 IPR003888 GO:0005634
Gabi1175g00011 2227 MobiDBLite consensus disorder prediction 8 48 - -
Gabi1175g00011 2227 Pfam Methyl-CpG binding domain 240 293 IPR001739 GO:0003677
Gabi1175g00011 2227 Gene3D - 384 493 - -
Gabi1175g00011 2227 MobiDBLite consensus disorder prediction 1883 1902 - -
Gabi1175g00011 2227 MobiDBLite consensus disorder prediction 2206 2227 - -
Gabi1175g00011 2227 MobiDBLite consensus disorder prediction 1884 1902 - -
Gabi1175g00011 2227 ProSiteProfiles Zinc finger PHD-type profile. 80 134 IPR019787 -
Gabi1175g00011 2227 SUPERFAMILY FYVE/PHD zinc finger 1267 1330 IPR011011 -
Gabi1175g00011 2227 MobiDBLite consensus disorder prediction 1 48 - -
Gabi1175g00011 2227 Pfam PHD-finger 83 132 IPR019787 -
Gabi1175g00011 2227 Pfam PHD-finger 1280 1326 IPR019787 -
Gabi1175g00011 2227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 132 IPR013083 -
Gabi1175g00011 2227 ProSiteProfiles Bromodomain profile. 1171 1219 IPR001487 GO:0005515
Gabi1175g00011 2227 CDD PHD1_Lid2p_like 1280 1325 - -
Gabi1175g00011 2227 SUPERFAMILY FYVE/PHD zinc finger 80 143 IPR011011 -
Gabi1175g00011 2227 MobiDBLite consensus disorder prediction 2187 2227 - -
Gabi1175g00011 2227 ProSitePatterns Zinc finger PHD-type signature. 1281 1325 IPR019786 -
Gabi1175g00011 2227 MobiDBLite consensus disorder prediction 2027 2048 - -
Gabi1175g00011 2227 PANTHER OS02G0192300 PROTEIN 23 2223 - -
Gabi1175g00011 2227 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1360 1404 IPR028942 -
Gabi1175g00011 2227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1231 1340 IPR013083 -
Gabi1175g00011 2227 ProSitePatterns Zinc finger PHD-type signature. 83 131 IPR019786 -
Gabi1175g00011 2227 Gene3D - 1107 1230 IPR036427 GO:0005515
Gabi1175g00011 2227 SUPERFAMILY DNA-binding domain 239 293 IPR016177 GO:0003677
Gabi1175g00011 2227 CDD PHD_SF 83 131 - -
Gabi1175g00011 2227 SMART PHD_3 1280 1326 IPR001965 -
Gabi1175g00011 2227 SMART PHD_3 82 132 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1175g00011 Gabi-Chr1175 69135 84357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1175g00011 3 2227 C2H2 Transcription Factor Family AT3G01460 45.510 0.0 1754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi1175g00011 MBD 1.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1175g00011 K22768 - gmx:100820223 3398.6