Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1175g00010 ATGATCATGGAACTCAACGATTCCACCGGCGGCGACCACAACAACAACGCGCCGCCGCCGCCGCTTCAGCAGCAGCAGCAAGACTCTCGCTCTGGTCTTGGAATCGACCTCAACGAGATCCCTTCCCCTTCTTCTTCCTTCGCGGAAACCCTACCGGACTGCGCCGTCGACATCGTCCGCGCCTACCACGAGAACCCCGCCCCTCCTCCCGGCGGACCCGCCAACCTCCCCCGAGGCTCCCCTCCCTGCGTCGCCTGCGGAAAGCCCGGCGGCGGCGGCGGAAGCCACGTCGTCTGTGACGGCTGCGAGCGCTGCTTCCACTTGGCCTGCGCCGGGATTCGCGGCGGTGGTCGCCAGGTAGCGAACATCAGCGAGTGGGTGTGCGGCGAGTGTGTCTCCGGCGGGGTGAAGAGTAAGCGGTGGCCGTTGGGTGTCAAGTCCAAGCAGCTTCTTGATATTAACGCTTCACCGCCCAGTGATGCCGACGGTGACGGTGGTGGTGAGGAGTTGCAGGATTTGAGAAAGCACACTCCGGGTGATAATTCTTTTGGTGCCAATCCATTTGGTGCCCCAGTGACCTATTCAAACTTCTACAACGGGAGTGCTTTTGGCTTCCAAAAGGCATCTGGAGTTGTGACACATGCTGTTAGAGTGGGTTTTGAGGATATATTGAATCATACCCAGTCGATGAGTAAAAGCTTTGAGGAGGTATATATGAATTTCCCTCTTGGAATTCATAGTAATAATAATACAGCTATTAGAATACCATCTCAGAGTCCAAATGAGATATTTTTGCAGGCTCTTAGAGATTTTATATCTGAAAGGCGTGGTGTACTACAGGAAGGTTGGCGAGTGGAATTTAGACAATCACTGAGCAGCTCTGAATTGTATGCAGTTTACTGTGCGCCGGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATCTGGGTCTAACTTCTGGCTACAATTCTATGGAATCTGAAATAAGAAATGAGAGGTCTCTCCCTTCTGTAGGTGGGCCTCACCTATGCAGAAAAAGAAAGTCAACAAGAACTCCAGTAGCCAATGGTTTTGCTGAAAAGTGGGGAACTTTGACAAATAGTAATTGCAAGGATCTTCCTTCTGATTGTTTAGGTGTGGAATGTGCTAATGCTCGGGGGAATATCCTAGAAGTTGCAGAAATTGGAAGAAAAGAGGATGATCGCTCTGGCCCTCAGCAATCTGCTGATGGACTTCCTTTACAGTTCAAGGACTTTTTTGTTCTTTCTTTGGGAAAACTTGATGGTAGACCTTCATATTATGATGTTAACCTTATCTGTCCTATAGGTTATAAATCCTGTTGGCATGATAAGATTACTGGCTCTCTTTTTACATGTGAAGTTCTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCAGAAGGTGTTCCTGTTCAAAATTTCCTGTTCCAGTTGGGTCGACCATCCTCTCAATGTCAAGTCTTTGTCAATTTGTGAGTCAAACGAATGAAGGTGAGAGAAAGACGATTGATAGTATGGATTTAGATGGTGATGAAAGTATCCAGATGATCCTTTTAGACCCTTGCGTTCCAACGGAAAATGATGTCTTGAGTTGTCTTGCTAGTTGCTCGAATGAAGCATGTGATACTCACACATCAGATGTATTACAGCCTGTTGCTGGTTCAGTGCAAGATAATACCAGGAATTCATCAGCTGATAACTTGGGGTTTATTGATGGAATTGGTGAAATTTTGGTGGAAGAGCGGTCATCGTCCTCAGCATGGAAAGTTATTTCCCAAAAGTTAGTTAATGCTTGCAAGGATATCTGCAAGCAGAAAGGAGCTCTCAAGCTTTATTGTAAACATGTTGAAAATGAAACATGCTTCCATAAATGGGATATAAGGAATGGCAAAAGCAATATACACTTCACATCTTTGGATAAATTTTGTTGTTCACTTGGTTCGGTCAGCATCCCAGATGTAATTTATGCTTACAATGATCTGGAAAGTCTCTATGAAGGCTTAGGAAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTGGAACATCAGCCTGGTTTCCAAGACTCTCTTCAGTATAACATTCTAAATAGTAGAAGTAATAGCTCTTCATTGCCAACAGTAGAAAATGGTTTCCTAGAGGTTGAGTGGAGAGGTGGATCAAAATATCAGGAAGAAGAAGCAGTTCAGGGTTTATATAGGAGGCTCAAGAATGTGAGATTGACTGAAAAATGCATTAAGGAAGATCGTTGTCCACCTCCTGGGAAGCCAATATGCTCTAAAGCTCCTAGTGAACTTATTGGTGACATTTTTCAGGCTTGGGAGCTTTTAGAGAGATTTCATGAAATTCTGGACCTGAAAGAACCATTGTCATTGTATGAGCTAGAGAAGGAACTTATCAACCCTTGGTTTGATGGATTGGATTTTCTTGAGAAATCTGAGAGGGAAACAGATGGAAGTCAATTTTTAAGTTTGCAGGGAGCTGATAGTAATTGCAGACCAATATTGTCCCCAAGATGTGAAGCTGGACCATCAGGTTCCGCAGAAAGTTCCCATGCATTTATTCAAGTGGAAACGGAAGCAATGAAAGAGGCAGCTCAAGTTAAGCTTGCATCTTTCACCTATGCGAGATGCTTTGGGGTAGCGTTGACCAAGGCTCATAATTCATTGCTAAGAGTGCTAATAGGTGAACTGCAATCAAGGGTGGCTGCTCTGGTGGATCCAAATTCTGAACCTGGAGAGACACGAACAAGACGGGGAAGAAGGAAAGATATAGACTGTGCATTTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTATTAATGAATTGACTTGGCCAGAATTAGCTCGGAGATATGTCTTGGCTTTCTTATCAATGGATGGTAACCTTGAGTCTGCGGAAATTACTGCTCGTGAAAGTGGTAAAGTATTTCGCTGCTTAAGAGGCGATGGTGGTTTGCTATGTGGTTCCCTTACTGGTGTAGCTGGGATGGAAGCAGATGCACTGTTACTTGCGGAGGCCACAAAGAAAATATTTGGTTCTTTGAGCAGAGAAAATGATGCACTAACCATGGAAGAAGAGGAGTCTGATGCAAAGGGTGCATCTGAAAAAATTCTGGGGAATGATGGTATTATTCCTGAATGGGCGCAGGTGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTTATGAAGCTCTGGAAAAGAATCCACCAGAGTGGGCAAAGAAAATACTGGAGCATTCAATTAGTAAAGAAGTGTACAAGGGGAATGCATCTGGACCAACGAAGAAAGCAGTTCTTTCAGTGTTGGCTAATGTAAATGGTGAAGGATCGCAACAGAATCCCAATAAAGGAAGGAAAAAGAAGATTGTTGTATCTATTTCTGATATTATCATGAAACAATGTCGGATTGTATTACGTCGTGCAGCTGCTGCAGATGATTCAAAGGTTTTCTGTAATTTGCTGGGAAGAAAACTAATAAATTTTTCCGATAATGATGATGAAGGGCTTCTTGGACCCCCAGCTATGGTGGCCCGTCCTCTTGACTTCCGGACTGTTGACCTAAGGTTGGCTGCTGGATCTTATGGTGGATCTCATGAAGCTTTTCTGGAGGATGTTCGCGAGTTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGACTTAGTTGAACTGGCTGAAAAATTATCCCAGAATTTTGAATCGTTATATAATGACGAGGTTGTTACCCATGCCCAAAAATTTGTGGAGTATGCTAAATTGGGATGCTTAAGTGCAGAAATGAGAAAAGAAGTTCATGATTTTATTGTGTCAACGAGTGAGATTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGACAGGGATGATGACAGTGTTCTACTATGCGATACTTGTGATGCTGAGTATCATACGTATTGCTTGAATCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCTTCTTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTATACAGATTATTGGAAAACATAAAAGTAAAAAATTCCAGGGAGAAGTTAATTCTCTTTACTTGGAAGCTCTAACTCATTTATCAGCTGTACTCGAAGAAAAAGAATACTGGGAGTTCAGTGTGGGCGAGAGAACTTTCCTTATCAAGTTTTTAAGCGATGAGTTGCTTAACTCTTCCCTGCTACGCCAGCACCTTGAGCAATGTGCAGAGTTGTCTGTTGAGTTACATCAGAAATTGCGTGCACTTTCTGTAGAGTGGAAAAGCCTGAAAACTAAAGAAGATATTTTATCAACAAAAGCTGCAAAAATTGATACATTCTCACTAAATACCGCTGGAGAAGTTGGTCTTAAGGAAGGATTTACAGCTTTGTTCTCAAATAGTGGTAAGTGTCTGGGGCAGCCTCAAACTGTAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGTGACTGCCAAAGAGAAGTACAGGTTCAATAGTGTTGATAAAACTGTACCAGTGACAAATTCAGATTCTGATAGCCAAAATCTGAATTCCATAGATTTAGAGGGACAACTTGGGAGTGCCTCTGTGGCTGTGGAGTCTCAATGTACTGATAGATCCCCCAAGTCTTTTGCATCACCAAATCATCTGCATGAAGAAATAAATGGTTCTGGTGGAGCAGCTCATATCCAGGTTAACCAACAGAAATGTGAGGGAAGGGACATCTCTACTCTTGTGACATATCAGCAAGAACAATGTGTGCCTGTTGATGTTCCTCAGATTGCTATGAATGAGTCAGAACCCTTCCACCTCGAGCTCAGTGCCGTCAAGCGTAATATTTCATTACTGCAGGATTCCATAACTAGCGTAGGATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATATTTGGGCATTGATTCTATTGGTCGACTGTACTGGGCTTCGGCTATGCCCAGGGGACGTTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTGCATGGAAAAGGAAGGGAAGTTAGCAGAGACACCGTGGAGAAGTTTCCTGTTCTGCAGCGTTGTGCACTATCTGACAAGGATAACTGTAAGATGTTGGGGGTGACCAAAGACTCCTCTTCTTTAATGTCTCAACCAAGTGATGCTTTGGGCATTTGTTCACCATGGATTGCTTATGAAACTGATGCAGAAATTGAAGAGATCTTATGTTGGCTGAATGATAATGACCCTAAAGAAAGAGAACTGAAAGATTCCATTATGCTGGGGCCAAAATCAAGATTTCAGGAGTTTATTAATGCACAGACTGAAGTTCAGGCTGAGGACCAAGGACCTATTTCTATGCCAGGAAATAGTGAGAAAACATTATCTAATTCTCTTGTTACAAAGGCGACGTCCTTGCTGGAAAAGAAATATGGTTCCTTTTTTGAGTGGGATACCATTGAGGTGTTGAAGAAGCGAAGCAAAAAGGCCAGAACAACTAATGATGAAAAAATGTATAGGTGTGAGTGCCTAGAACCCATATGGCCTTGTAGGAAACACTGCATGTATTGCCACAAAACTTTTTCAAGTGATGTTGAATTGGAGGGACACAATGATGGCAAATGTAATGCAGGTCTGATGATGACCTTGGAGAAGAATAAGGATAAAAATGGATCTTCCAAAGGAAAAGGGAACTCAAAATGTGATACCTCACATGGAAAATTCAAAGGTGGTGCAGAAACAGCTGGATCGTCAATTAATGAAAATTATAAGCGTTGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAACTTTGAAGATATATGTTCCAAGTTTGTGACAAATGATTCCAACAAGGAACTTGTCAGAGAAATAGGTCTTATTGGTTCAGATGGTATTCCATCCTTTGTTCCTTCCATCTCTCCTTTTGTTAGTGAGTATACGCTATTCTCAGCTCAAAAGGATGATAGCATTGATGGTGGTGCATCCAAAGCTTCAGAGAGCCGGGTTTTTCAAGGAAGCAATGATGGAGCTGGCATATGTCATGACCTTAAATCCAGCATATCTCCTGGAAGGTTAGCTGCAAATGAAAGCAATAAAGCAGGACAATCCAACAAATCATCGTTGGGAGAACAAAGAGATGGAAAGTTCTCTTTTTGTAGTCCTGCTTCAGATATGGTAGTTGATGGCTGCTGTGTGGTCCCTTCATCTTCGTTGAGACCATTAGTTGGAAAAGTTTCTCATATTTTAAGGCAACTGAAGATTAATCTACTTGATATGGATGCTGCACTCCCAAAAGTAGTTCTGAGACCATCAAGGGCACAGTTGGATAGAAGACAGGCCTGGCGTGCATTTGTTAAATCTGCAGAGACTATATATGAGATGGTTCAGGCAACAATTACACTGGAGGATATGATTAAGACAGAGTACTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCTGCTGCTGCGAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCCCTTGATTCAGCCATTATATATGAGAAAATGCCCAATTCAAGTTTTACTGACAGCTCTGAACCTTCTGCGATAGCAGAACAGAAACAGCTGATCACGGTGGATGCAGAGAAATCTAAAGCAAGCCGGAAATCGAACAGGAAAAGGAGGGAACCGGATGGTTGA 6774 0.4302 MIMELNDSTGGDHNNNAPPPPLQQQQQDSRSGLGIDLNEIPSPSSSFAETLPDCAVDIVRAYHENPAPPPGGPANLPRGSPPCVACGKPGGGGGSHVVCDGCERCFHLACAGIRGGGRQVANISEWVCGECVSGGVKSKRWPLGVKSKQLLDINASPPSDADGDGGGEELQDLRKHTPGDNSFGANPFGAPVTYSNFYNGSAFGFQKASGVVTHAVRVGFEDILNHTQSMSKSFEEVYMNFPLGIHSNNNTAIRIPSQSPNEIFLQALRDFISERRGVLQEGWRVEFRQSLSSSELYAVYCAPDGKIFDSVYEVACYLGLTSGYNSMESEIRNERSLPSVGGPHLCRKRKSTRTPVANGFAEKWGTLTNSNCKDLPSDCLGVECANARGNILEVAEIGRKEDDRSGPQQSADGLPLQFKDFFVLSLGKLDGRPSYYDVNLICPIGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSKFPVPVGSTILSMSSLCQFVSQTNEGERKTIDSMDLDGDESIQMILLDPCVPTENDVLSCLASCSNEACDTHTSDVLQPVAGSVQDNTRNSSADNLGFIDGIGEILVEERSSSSAWKVISQKLVNACKDICKQKGALKLYCKHVENETCFHKWDIRNGKSNIHFTSLDKFCCSLGSVSIPDVIYAYNDLESLYEGLGKWLEQDRFGLDVEFVQEVLEHQPGFQDSLQYNILNSRSNSSSLPTVENGFLEVEWRGGSKYQEEEAVQGLYRRLKNVRLTEKCIKEDRCPPPGKPICSKAPSELIGDIFQAWELLERFHEILDLKEPLSLYELEKELINPWFDGLDFLEKSERETDGSQFLSLQGADSNCRPILSPRCEAGPSGSAESSHAFIQVETEAMKEAAQVKLASFTYARCFGVALTKAHNSLLRVLIGELQSRVAALVDPNSEPGETRTRRGRRKDIDCAFPAKRTKLNMLPINELTWPELARRYVLAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDALTMEEEESDAKGASEKILGNDGIIPEWAQVLEPVRKLPTNVGTRIRKCVYEALEKNPPEWAKKILEHSISKEVYKGNASGPTKKAVLSVLANVNGEGSQQNPNKGRKKKIVVSISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINFSDNDDEGLLGPPAMVARPLDFRTVDLRLAAGSYGGSHEAFLEDVRELWNNVRVAFGDQPDLVELAEKLSQNFESLYNDEVVTHAQKFVEYAKLGCLSAEMRKEVHDFIVSTSEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERIQIIGKHKSKKFQGEVNSLYLEALTHLSAVLEEKEYWEFSVGERTFLIKFLSDELLNSSLLRQHLEQCAELSVELHQKLRALSVEWKSLKTKEDILSTKAAKIDTFSLNTAGEVGLKEGFTALFSNSGKCLGQPQTVVDNPSNFGVFVDSLPSEVTAKEKYRFNSVDKTVPVTNSDSDSQNLNSIDLEGQLGSASVAVESQCTDRSPKSFASPNHLHEEINGSGGAAHIQVNQQKCEGRDISTLVTYQQEQCVPVDVPQIAMNESEPFHLELSAVKRNISLLQDSITSVGSQLLKLSVRREYLGIDSIGRLYWASAMPRGRSRIVVDASAALLHGKGREVSRDTVEKFPVLQRCALSDKDNCKMLGVTKDSSSLMSQPSDALGICSPWIAYETDAEIEEILCWLNDNDPKERELKDSIMLGPKSRFQEFINAQTEVQAEDQGPISMPGNSEKTLSNSLVTKATSLLEKKYGSFFEWDTIEVLKKRSKKARTTNDEKMYRCECLEPIWPCRKHCMYCHKTFSSDVELEGHNDGKCNAGLMMTLEKNKDKNGSSKGKGNSKCDTSHGKFKGGAETAGSSINENYKRCSRLIKFSNEESTCPFNFEDICSKFVTNDSNKELVREIGLIGSDGIPSFVPSISPFVSEYTLFSAQKDDSIDGGASKASESRVFQGSNDGAGICHDLKSSISPGRLAANESNKAGQSNKSSLGEQRDGKFSFCSPASDMVVDGCCVVPSSSLRPLVGKVSHILRQLKINLLDMDAALPKVVLRPSRAQLDRRQAWRAFVKSAETIYEMVQATITLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAIIYEKMPNSSFTDSSEPSAIAEQKQLITVDAEKSKASRKSNRKRREPDG 2257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1175g00010 2257 Pfam PHD-finger 83 132 IPR019787 -
Gabi1175g00010 2257 Pfam PHD-finger 1310 1356 IPR019787 -
Gabi1175g00010 2257 MobiDBLite consensus disorder prediction 8 48 - -
Gabi1175g00010 2257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 132 IPR013083 -
Gabi1175g00010 2257 SUPERFAMILY Bromodomain 1145 1265 IPR036427 GO:0005515
Gabi1175g00010 2257 MobiDBLite consensus disorder prediction 2217 2257 - -
Gabi1175g00010 2257 SUPERFAMILY FYVE/PHD zinc finger 1297 1360 IPR011011 -
Gabi1175g00010 2257 SUPERFAMILY FYVE/PHD zinc finger 80 143 IPR011011 -
Gabi1175g00010 2257 ProSiteProfiles Zinc finger PHD-type profile. 80 134 IPR019787 -
Gabi1175g00010 2257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1261 1370 IPR013083 -
Gabi1175g00010 2257 Gene3D - 414 523 - -
Gabi1175g00010 2257 CDD PHD1_Lid2p_like 1310 1355 - -
Gabi1175g00010 2257 ProSiteProfiles FYR domain FYRN motif profile. 413 466 IPR003888 GO:0005634
Gabi1175g00010 2257 PANTHER OS02G0192300 PROTEIN 23 2253 - -
Gabi1175g00010 2257 MobiDBLite consensus disorder prediction 1913 1932 - -
Gabi1175g00010 2257 Pfam Methyl-CpG binding domain 270 323 IPR001739 GO:0003677
Gabi1175g00010 2257 MobiDBLite consensus disorder prediction 1 48 - -
Gabi1175g00010 2257 MobiDBLite consensus disorder prediction 1914 1932 - -
Gabi1175g00010 2257 MobiDBLite consensus disorder prediction 152 184 - -
Gabi1175g00010 2257 ProSiteProfiles Bromodomain profile. 1201 1249 IPR001487 GO:0005515
Gabi1175g00010 2257 SMART PHD_3 1310 1356 IPR001965 -
Gabi1175g00010 2257 SMART PHD_3 82 132 IPR001965 -
Gabi1175g00010 2257 SUPERFAMILY DNA-binding domain 271 323 IPR016177 GO:0003677
Gabi1175g00010 2257 Gene3D - 1137 1260 IPR036427 GO:0005515
Gabi1175g00010 2257 ProSitePatterns Zinc finger PHD-type signature. 1311 1355 IPR019786 -
Gabi1175g00010 2257 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1390 1434 IPR028942 -
Gabi1175g00010 2257 ProSitePatterns Zinc finger PHD-type signature. 83 131 IPR019786 -
Gabi1175g00010 2257 ProSiteProfiles Zinc finger PHD-type profile. 1308 1358 IPR019787 -
Gabi1175g00010 2257 CDD PHD_SF 83 131 - -
Gabi1175g00010 2257 MobiDBLite consensus disorder prediction 2057 2078 - -
Gabi1175g00010 2257 MobiDBLite consensus disorder prediction 2236 2257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1175g00010 Gabi-Chr1175 69135 84357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1175g00010 3 2257 C2H2 Transcription Factor Family AT3G01460 45.573 0.0 1780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi1175g00010 MBD 1.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1175g00010 K22768 - gmx:100820223 3382.81