Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1175g00009 ATGATCATGGAACTCAACGATTCCACCGGCGGCGACCACAACAACAACGCGCCGCCGCCGCCGCTTCAGCAGCAGCAGCAAGACTCTCGCTCTGGTCTTGGAATCGACCTCAACGAGATCCCTTCCCCTTCTTCTTCCTTCGCGGAAACCCTACCGGACTGCGCCGTCGACATCGTCCGCGCCTACCACGAGAACCCCGCCCCTCCTCCCGGCGGACCCGCCAACCTCCCCCGAGGCTCCCCTCCCTGCGTCGCCTGCGGAAAGCCCGGCGGCGGCGGCGGAAGCCACGTCGTCTGTGACGGCTGCGAGCGCTGCTTCCACTTGGCCTGCGCCGGGATTCGCGGCGGTGGTCGCCAGGTAGCGAACATCAGCGAGTGGGTGTGCGGCGAGTGTGTCTCCGGCGGGGTGAAGAGTAAGCGGTGGCCGTTGGGTGTCAAGTCCAAGCAGCTTCTTGATATTAACGCTTCACCGCCCAGTGATGCCGACGGTGACGGTGGTGGTGAGGAGTTGCAGGATTTGAGAAAGCACACTCCGGGTGATAATTCTTTTGGTGCCAATCCATTTGGTGCCCCAGTGACCTATTCAAACTTCTACAACGGGAGTGCTTTTGGCTTCCAAAAGGCATCTGGAGTTGTGACACATGCTGTTAGAGTGGGTTTTGAGGATATATTGAATCATACCCAGTCGATGAGTAAAAGCTTTGAGGAGGTATATATGAATTTCCCTCTTGGAATTCATAGTAATAATAATACAGCTATTAGAATACCATCTCAGAGTCCAAATGAGATATTTTTGCAGGCTCTTAGAGATTTTATATCTGAAAGGCGTGGTGTACTACAGGAAGGTTGGCGAGTGGAATTTAGACAATCACTGAGCAGCTCTGAATTGTATGCAGTTTACTGTGCGCCGGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATCTGGGTCTAACTTCTGGCTACAATTCTATGGAATCTGAAATAAGAAATGAGAGGTCTCTCCCTTCTGTAGGTGGGCCTCACCTATGCAGAAAAAGAAAGTCAACAAGAACTCCAGTAGCCAATGGTTTTGCTGAAAAGTGGGGAACTTTGACAAATAGTAATTGCAAGGATCTTCCTTCTGATTGTTTAGGTGTGGAATGTGCTAATGCTCGGGGGAATATCCTAGAAGTTGCAGAAATTGGAAGAAAAGAGGATGATCGCTCTGGCCCTCAGCAATCTGCTGTAAGTGAATCTAGTTCACATCTTCTTGATGGACTTCCTTTACAGTTCAAGGACTTTTTTGTTCTTTCTTTGGGAAAACTTGATGGTAGACCTTCATATTATGATGTTAACCTTATCTGTCCTATAGGTTATAAATCCTGTTGGCATGATAAGATTACTGGCTCTCTTTTTACATGTGAAGTTCTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCAGAAGGTGTTCCTGTTCAAAATTTCCTGTTCCAGTTGGGTCGACCATCCTCTCAATGTCAAGTCTTTGTCAATTTGTGAGTCAAACGAATGAAGGTGAGAGAAAGACGATTGATAGTATGGATTTAGATGGTGATGAAAGTATCCAGATGATCCTTTTAGACCCTTGCGTTCCAACGGAAAATGATGTCTTGAGTTGTCTTGCTAGTTGCTCGAATGAAGCATGTGATACTCACACATCAGATGTATTACAGCCTGTTGCTGGTTCAGTGCAAGATAATACCAGGAATTCATCAGCTGATAACTTGGGGTTTATTGATGGAATTGGTGAAATTTTGGTGGAAGAGCGGTCATCGTCCTCAGCATGGAAAGTTATTTCCCAAAAGTTAGTTAATGCTTGCAAGGATATCTGCAAGCAGAAAGGAGCTCTCAAGCTTTATTGTAAACATGTTGAAAATGAAACATGCTTCCATAAATGGGATATAAGGAATGGCAAAAGCAATATACACTTCACATCTTTGGATAAATTTTGTTGTTCACTTGGTTCGGTCAGCATCCCAGATGTAATTTATGCTTACAATGATCTGGAAAGTCTCTATGAAGGCTTAGGAAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTGGAACATCAGCCTGGTTTCCAAGACTCTCTTCAGTATAACATTCTAAATAGTAGAAGTAATAGCTCTTCATTGCCAACAGTAGAAAATGGTTTCCTAGAGGTTGAGTGGAGAGGTGGATCAAAATATCAGGAAGAAGAAGCAGTTCAGGGTTTATATAGGAGGCTCAAGAATGTGAGATTGACTGAAAAATGCATTAAGGAAGATCGTTGTCCACCTCCTGGGAAGCCAATATGCTCTAAAGCTCCTAGTGAACTTATTGGTGACATTTTTCAGGCTTGGGAGCTTTTAGAGAGATTTCATGAAATTCTGGACCTGAAAGAACCATTGTCATTGTATGAGCTAGAGAAGGAACTTATCAACCCTTGGTTTGATGGATTGGATTTTCTTGAGAAATCTGAGAGGGAAACAGATGGAAGTCAATTTTTAAGTTTGCAGGGAGCTGATAGTAATTGCAGACCAATATTGTCCCCAAGATGTGAAGCTGGACCATCAGGTTCCGCAGAAAGTTCCCATGCATTTATTCAAGTGGAAACGGAAGCAATGAAAGAGGCAGCTCAAGTTAAGCTTGCATCTTTCACCTATGCGAGATGCTTTGGGGTAGCGTTGACCAAGGCTCATAATTCATTGCTAAGAGTGCTAATAGGTGAACTGCAATCAAGGGTGGCTGCTCTGGTGGATCCAAATTCTGAACCTGGAGAGACACGAACAAGACGGGGAAGAAGGAAAGATATAGACTGTGCATTTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTATTAATGAATTGACTTGGCCAGAATTAGCTCGGAGATATGTCTTGGCTTTCTTATCAATGGATGGTAACCTTGAGTCTGCGGAAATTACTGCTCGTGAAAGTGGTAAAGTATTTCGCTGCTTAAGAGGCGATGGTGGTTTGCTATGTGGTTCCCTTACTGGTGTAGCTGGGATGGAAGCAGATGCACTGTTACTTGCGGAGGCCACAAAGAAAATATTTGGTTCTTTGAGCAGAGAAAATGATGCACTAACCATGGAAGAAGAGGAGTCTGATGCAAAGGGTGCATCTGAAAAAATTCTGGGGAATGATGGTATTATTCCTGAATGGGCGCAGGTGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTTATGAAGCTCTGGAAAAGAATCCACCAGAGTGGGCAAAGAAAATACTGGAGCATTCAATTAGTAAAGAAGTGTACAAGGGGAATGCATCTGGACCAACGAAGAAAGCAGTTCTTTCAGTGTTGGCTAATGTAAATGGTGAAGGATCGCAACAGAATCCCAATAAAGGAAGGAAAAAGAAGATTGTTGTATCTATTTCTGATATTATCATGAAACAATGTCGGATTGTATTACGTCGTGCAGCTGCTGCAGATGATTCAAAGGTTTTCTGTAATTTGCTGGGAAGAAAACTAATAAATTTTTCCGATAATGATGATGAAGGGCTTCTTGGACCCCCAGCTATGGTGGCCCGTCCTCTTGACTTCCGGACTGTTGACCTAAGGTTGGCTGCTGGATCTTATGGTGGATCTCATGAAGCTTTTCTGGAGGATGTTCGCGAGTTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGACTTAGTTGAACTGGCTGAAAAATTATCCCAGAATTTTGAATCGTTATATAATGACGAGGTTGTTACCCATGCCCAAAAATTTGTGGAGTATGCTAAATTGGGATGCTTAAGTGCAGAAATGAGAAAAGAAGTTCATGATTTTATTGTGTCAACGAGTGAGATTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGACAGGGATGATGACAGTGTTCTACTATGCGATACTTGTGATGCTGAGTATCATACGTATTGCTTGAATCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCTTCTTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTATACAGATTATTGGAAAACATAAAAGTAAAAAATTCCAGGGAGAAGTTAATTCTCTTTACTTGGAAGCTCTAACTCATTTATCAGCTGTACTCGAAGAAAAAGAATACTGGGAGTTCAGTGTGGGCGAGAGAACTTTCCTTATCAAGTTTTTAAGCGATGAGTTGCTTAACTCTTCCCTGCTACGCCAGCACCTTGAGCAATGTGCAGAGTTGTCTGTTGAGTTACATCAGAAATTGCGTGCACTTTCTGTAGAGTGGAAAAGCCTGAAAACTAAAGAAGATATTTTATCAACAAAAGCTGCAAAAATTGATACATTCTCACTAAATACCGCTGGAGAAGTTGGTCTTAAGGAAGGATTTACAGCTTTGTTCTCAAATAGTGGTAAGTGTCTGGGGCAGCCTCAAACTGTAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGTGACTGCCAAAGAGAAGTACAGGTTCAATAGTGTTGATAAAACTGTACCAGTGACAAATTCAGATTCTGATAGCCAAAATCTGAATTCCATAGATTTAGAGGGACAACTTGGGAGTGCCTCTGTGGCTGTGGAGTCTCAATGTACTGATAGATCCCCCAAGTCTTTTGCATCACCAAATCATCTGCATGAAGAAATAAATGGTTCTGGTGGAGCAGCTCATATCCAGGTTAACCAACAGAAATGTGAGGGAAGGGACATCTCTACTCTTGTGACATATCAGCAAGAACAATGTGTGCCTGTTGATGTTCCTCAGATTGCTATGAATGAGTCAGAACCCTTCCACCTCGAGCTCAGTGCCGTCAAGCGTAATATTTCATTACTGCAGGATTCCATAACTAGCGTAGGATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATATTTGGGCATTGATTCTATTGGTCGACTGTACTGGGCTTCGGCTATGCCCAGGGGACGTTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTGCATGGAAAAGGAAGGGAAGTTAGCAGAGACACCGTGGAGAAGTTTCCTGTTCTGCAGCGTTGTGCACTATCTGACAAGGATAACTGTAAGATGTTGGGGGTGACCAAAGACTCCTCTTCTTTAATGTCTCAACCAAGTGATGCTTTGGGCATTTGTTCACCATGGATTGCTTATGAAACTGATGCAGAAATTGAAGAGATCTTATGTTGGCTGAATGATAATGACCCTAAAGAAAGAGAACTGAAAGATTCCATTATGCTGGGGCCAAAATCAAGATTTCAGGAGTTTATTAATGCACAGACTGAAGTTCAGGCTGAGGACCAAGGACCTATTTCTATGCCAGGAAATAGTGAGAAAACATTATCTAATTCTCTTGTTACAAAGGCGACGTCCTTGCTGGAAAAGAAATATGGTTCCTTTTTTGAGTGGGATACCATTGAGGTGTTGAAGAAGCGAAGCAAAAAGGCCAGAACAACTAATGATGAAAAAATGTATAGGTGTGAGTGCCTAGAACCCATATGGCCTTGTAGGAAACACTGCATGTATTGCCACAAAACTTTTTCAAGTGATGTTGAATTGGAGGGACACAATGATGGCAAATGTAATGCAGGTCTGATGATGACCTTGGAGAAGAATAAGGATAAAAATGGATCTTCCAAAGGAAAAGGGAACTCAAAATGTGATACCTCACATGGAAAATTCAAAGGTGGTGCAGAAACAGCTGGATCGTCAATTAATGAAAATTATAAGCGTTGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAACTTTGAAGATATATGTTCCAAGTTTGTGACAAATGATTCCAACAAGGAACTTGTCAGAGAAATAGGTCTTATTGGTTCAGATGGTATTCCATCCTTTGTTCCTTCCATCTCTCCTTTTGTTAGTGAGTATACGCTATTCTCAGCTCAAAAGGATGATAGCATTGATGGTGGTGCATCCAAAGCTTCAGAGAGCCGGGTTTTTCAAGGAAGCAATGATGGAGCTGGCATATGTCATGACCTTAAATCCAGCATATCTCCTGGAAGGTTAGCTGCAAATGAAAGCAATAAAGCAGGACAATCCAACAAATCATCGTTGGGAGAACAAAGAGATGGAAAGTTCTCTTTTTGTAGTCCTGCTTCAGATATGGTAGTTGATGGCTGCTGTGTGGTCCCTTCATCTTCGTTGAGACCATTAGTTGGAAAAGTTTCTCATATTTTAAGGCAACTGAAGATTAATCTACTTGATATGGATGCTGCACTCCCAAAAGTAGTTCTGAGACCATCAAGGGCACAGTTGGATAGAAGACAGGCCTGGCGTGCATTTGTTAAATCTGCAGAGACTATATATGAGATGGTTCAGGCAACAATTACACTGGAGGATATGATTAAGACAGAGTACTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCTGCTGCTGCGAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCCCTTGATTCAGCCATTATATATGAGAAAATGCCCAATTCAAGTTTTACTGACAGCTCTGAACCTTCTGCGATAGCAGAACAGAAACAGCTGATCACGGTGGATGCAGAGAAATCTAAAGCAAGCCGGAAATCGAACAGGAAAAGGAGGGAACCGGATGGTTGA 6801 0.4298 MIMELNDSTGGDHNNNAPPPPLQQQQQDSRSGLGIDLNEIPSPSSSFAETLPDCAVDIVRAYHENPAPPPGGPANLPRGSPPCVACGKPGGGGGSHVVCDGCERCFHLACAGIRGGGRQVANISEWVCGECVSGGVKSKRWPLGVKSKQLLDINASPPSDADGDGGGEELQDLRKHTPGDNSFGANPFGAPVTYSNFYNGSAFGFQKASGVVTHAVRVGFEDILNHTQSMSKSFEEVYMNFPLGIHSNNNTAIRIPSQSPNEIFLQALRDFISERRGVLQEGWRVEFRQSLSSSELYAVYCAPDGKIFDSVYEVACYLGLTSGYNSMESEIRNERSLPSVGGPHLCRKRKSTRTPVANGFAEKWGTLTNSNCKDLPSDCLGVECANARGNILEVAEIGRKEDDRSGPQQSAVSESSSHLLDGLPLQFKDFFVLSLGKLDGRPSYYDVNLICPIGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSKFPVPVGSTILSMSSLCQFVSQTNEGERKTIDSMDLDGDESIQMILLDPCVPTENDVLSCLASCSNEACDTHTSDVLQPVAGSVQDNTRNSSADNLGFIDGIGEILVEERSSSSAWKVISQKLVNACKDICKQKGALKLYCKHVENETCFHKWDIRNGKSNIHFTSLDKFCCSLGSVSIPDVIYAYNDLESLYEGLGKWLEQDRFGLDVEFVQEVLEHQPGFQDSLQYNILNSRSNSSSLPTVENGFLEVEWRGGSKYQEEEAVQGLYRRLKNVRLTEKCIKEDRCPPPGKPICSKAPSELIGDIFQAWELLERFHEILDLKEPLSLYELEKELINPWFDGLDFLEKSERETDGSQFLSLQGADSNCRPILSPRCEAGPSGSAESSHAFIQVETEAMKEAAQVKLASFTYARCFGVALTKAHNSLLRVLIGELQSRVAALVDPNSEPGETRTRRGRRKDIDCAFPAKRTKLNMLPINELTWPELARRYVLAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDALTMEEEESDAKGASEKILGNDGIIPEWAQVLEPVRKLPTNVGTRIRKCVYEALEKNPPEWAKKILEHSISKEVYKGNASGPTKKAVLSVLANVNGEGSQQNPNKGRKKKIVVSISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINFSDNDDEGLLGPPAMVARPLDFRTVDLRLAAGSYGGSHEAFLEDVRELWNNVRVAFGDQPDLVELAEKLSQNFESLYNDEVVTHAQKFVEYAKLGCLSAEMRKEVHDFIVSTSEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERIQIIGKHKSKKFQGEVNSLYLEALTHLSAVLEEKEYWEFSVGERTFLIKFLSDELLNSSLLRQHLEQCAELSVELHQKLRALSVEWKSLKTKEDILSTKAAKIDTFSLNTAGEVGLKEGFTALFSNSGKCLGQPQTVVDNPSNFGVFVDSLPSEVTAKEKYRFNSVDKTVPVTNSDSDSQNLNSIDLEGQLGSASVAVESQCTDRSPKSFASPNHLHEEINGSGGAAHIQVNQQKCEGRDISTLVTYQQEQCVPVDVPQIAMNESEPFHLELSAVKRNISLLQDSITSVGSQLLKLSVRREYLGIDSIGRLYWASAMPRGRSRIVVDASAALLHGKGREVSRDTVEKFPVLQRCALSDKDNCKMLGVTKDSSSLMSQPSDALGICSPWIAYETDAEIEEILCWLNDNDPKERELKDSIMLGPKSRFQEFINAQTEVQAEDQGPISMPGNSEKTLSNSLVTKATSLLEKKYGSFFEWDTIEVLKKRSKKARTTNDEKMYRCECLEPIWPCRKHCMYCHKTFSSDVELEGHNDGKCNAGLMMTLEKNKDKNGSSKGKGNSKCDTSHGKFKGGAETAGSSINENYKRCSRLIKFSNEESTCPFNFEDICSKFVTNDSNKELVREIGLIGSDGIPSFVPSISPFVSEYTLFSAQKDDSIDGGASKASESRVFQGSNDGAGICHDLKSSISPGRLAANESNKAGQSNKSSLGEQRDGKFSFCSPASDMVVDGCCVVPSSSLRPLVGKVSHILRQLKINLLDMDAALPKVVLRPSRAQLDRRQAWRAFVKSAETIYEMVQATITLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAIIYEKMPNSSFTDSSEPSAIAEQKQLITVDAEKSKASRKSNRKRREPDG 2266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1175g00009 2266 ProSiteProfiles Bromodomain profile. 1210 1258 IPR001487 GO:0005515
Gabi1175g00009 2266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1270 1379 IPR013083 -
Gabi1175g00009 2266 MobiDBLite consensus disorder prediction 8 48 - -
Gabi1175g00009 2266 ProSitePatterns Zinc finger PHD-type signature. 1320 1364 IPR019786 -
Gabi1175g00009 2266 SUPERFAMILY Bromodomain 1154 1274 IPR036427 GO:0005515
Gabi1175g00009 2266 ProSiteProfiles Zinc finger PHD-type profile. 1317 1367 IPR019787 -
Gabi1175g00009 2266 MobiDBLite consensus disorder prediction 1923 1941 - -
Gabi1175g00009 2266 SUPERFAMILY FYVE/PHD zinc finger 80 143 IPR011011 -
Gabi1175g00009 2266 Pfam Methyl-CpG binding domain 270 323 IPR001739 GO:0003677
Gabi1175g00009 2266 Pfam PHD-finger 83 132 IPR019787 -
Gabi1175g00009 2266 Pfam PHD-finger 1319 1365 IPR019787 -
Gabi1175g00009 2266 ProSiteProfiles Zinc finger PHD-type profile. 80 134 IPR019787 -
Gabi1175g00009 2266 MobiDBLite consensus disorder prediction 2066 2087 - -
Gabi1175g00009 2266 PANTHER OS02G0192300 PROTEIN 23 2262 - -
Gabi1175g00009 2266 Gene3D - 423 532 - -
Gabi1175g00009 2266 MobiDBLite consensus disorder prediction 1 48 - -
Gabi1175g00009 2266 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1399 1443 IPR028942 -
Gabi1175g00009 2266 MobiDBLite consensus disorder prediction 2245 2266 - -
Gabi1175g00009 2266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 132 IPR013083 -
Gabi1175g00009 2266 MobiDBLite consensus disorder prediction 152 184 - -
Gabi1175g00009 2266 SUPERFAMILY DNA-binding domain 271 323 IPR016177 GO:0003677
Gabi1175g00009 2266 SMART PHD_3 1319 1365 IPR001965 -
Gabi1175g00009 2266 SMART PHD_3 82 132 IPR001965 -
Gabi1175g00009 2266 SUPERFAMILY FYVE/PHD zinc finger 1306 1369 IPR011011 -
Gabi1175g00009 2266 ProSiteProfiles FYR domain FYRN motif profile. 422 475 IPR003888 GO:0005634
Gabi1175g00009 2266 MobiDBLite consensus disorder prediction 2226 2266 - -
Gabi1175g00009 2266 ProSitePatterns Zinc finger PHD-type signature. 83 131 IPR019786 -
Gabi1175g00009 2266 CDD PHD_SF 83 131 - -
Gabi1175g00009 2266 CDD PHD1_Lid2p_like 1319 1364 - -
Gabi1175g00009 2266 Gene3D - 1146 1269 IPR036427 GO:0005515
Gabi1175g00009 2266 MobiDBLite consensus disorder prediction 1922 1941 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1175g00009 Gabi-Chr1175 69135 84357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1175g00009 3 2266 C2H2 Transcription Factor Family AT3G01460 45.376 0.0 1772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi1175g00009 MBD 1.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1175g00009 K22768 - gmx:100820223 3375.1