Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1175g00005 ATGAAGTTTACAACTTCATGGTCTCTGGAGACAGGATGCAGCCTTAAAATTCAACTTTCACATTTGTTGAATGATTCATGTTGTCAAGAGGGAGGAGAATGGCATGAGCTCCTTCACAGTAAGTGCTGTGGAGTAGCATTTGATGCTTACCTCTATGCACTGGGTCAGCGAGCAAATCAAATAGGGAAGGTTTACTTGGATTCCACTGAGCAAAGAAATTGTCTGTCTGGTATAAATAGTTTTGGTTGTGGAATTGAGAACCTAACAAGTGGTGCTGGTGGATGTTCTGACTTCTTGGTTGATGATGTTATGAATAAATTAGGAAATGAGCTTAGAATTTTAGAAGAAAATTGTCAACTTATGACTTTAGGGAATGAGTGGGAACAACAATCATGTCCTTCCTGCATTAGGGCATGGAAAAATATAGGAGGGGCAGATTCCAAAAACACCAAAATCAAAGGTGAAAAAATTGATTTTGATGTCTGTAGAATTGCTGTACTTGTGACATTGATAAGCAGCAAAATTGAAAATGAGATGTATGTTCACACAATTGTTGAGTGCTCTTCTCTTCTTGACCATCAACGCCTTTATGTTGAATTAGTAACATTTGGAGACATGTTAAAGAAAACTGCTTGTCCAAGAGTTTCTATCAAGGAAGTGTATGCTGCCACTAAACATCTGAATGAAATGAATATCATTGGGGAAGGAAGTGCAGGTAAGGTCTATAAAGGCAAAATGACAAGTAATCAGCATGTTGCAGTAAAGCACATAATCAATGATGATGGAAATATGGATACTTTTGTGAGAGAAGTTACAAGTTTATCTCATGTCAGACACCCAAATCTTGTTGCTTTGCTGGGTTACTGTGTTAAGGGAGATGAATGTTTTCTTGTCTATGAACTATGTCCCAATGGGAGTCTCTCTGAGTGGCTATTTGGCAAGAACAAAGTGCTGTCATGGATACAGAGGCTAGAAATTGCAATTGATAGTGCTCGAGGTCTTTGGTTTCTACACACATATCCAGGAGGCTGCATAGTTCACCGTGATATCAAGCCAACAAATATTCTTCTTGGGTCTAAATTTGAGGCAAAGCTATCAGATTTTGGACTGTCTAAAGTTATTGAGGTGGGTGAAACGTATGTTAGCTCAGAAGTGAGAGGAACTTTTGGATATGTTGATCCTGAGTACCAAAGCAACCACCATGTGAATTCATCTGGTGATGTTTACAGCTTTGGCATGGTACTTCTACAAATACTCTCGGGAAAAAGGGTATTAAATTTGAAACTGAGGAAACCAATGTCACTGAATAAAATGGCAAAAGTACTCACCAGAGGTGGCAGCATAACAGAATTTGCTGATCCTAAACTTCAAGGGGAGTACTCAGAGGAAGCATTTGATTTTACACTTCAGTTGGCTCTATCATGCACAGCCCTTAACCAACAACGTCCATCCATGGAGCAGGTTGTCAAAAGACTAGAAGAGGCCTTATTAATTTCAAAAGGGAGGATGGTTTCTACTACAGAAACTCCAGCAGACAATAAATCTATTCCATAG 1554 0.3906 MKFTTSWSLETGCSLKIQLSHLLNDSCCQEGGEWHELLHSKCCGVAFDAYLYALGQRANQIGKVYLDSTEQRNCLSGINSFGCGIENLTSGAGGCSDFLVDDVMNKLGNELRILEENCQLMTLGNEWEQQSCPSCIRAWKNIGGADSKNTKIKGEKIDFDVCRIAVLVTLISSKIENEMYVHTIVECSSLLDHQRLYVELVTFGDMLKKTACPRVSIKEVYAATKHLNEMNIIGEGSAGKVYKGKMTSNQHVAVKHIINDDGNMDTFVREVTSLSHVRHPNLVALLGYCVKGDECFLVYELCPNGSLSEWLFGKNKVLSWIQRLEIAIDSARGLWFLHTYPGGCIVHRDIKPTNILLGSKFEAKLSDFGLSKVIEVGETYVSSEVRGTFGYVDPEYQSNHHVNSSGDVYSFGMVLLQILSGKRVLNLKLRKPMSLNKMAKVLTRGGSITEFADPKLQGEYSEEAFDFTLQLALSCTALNQQRPSMEQVVKRLEEALLISKGRMVSTTETPADNKSIP 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1175g00005 517 FunFam probable receptor-like protein kinase At5g59700 302 510 - -
Gabi1175g00005 517 SUPERFAMILY Protein kinase-like (PK-like) 210 493 IPR011009 -
Gabi1175g00005 517 Gene3D Transferase(Phosphotransferase) domain 1 302 508 - -
Gabi1175g00005 517 Gene3D Phosphorylase Kinase; domain 1 190 301 - -
Gabi1175g00005 517 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 190 494 - -
Gabi1175g00005 517 Pfam SPARK 12 144 IPR043891 -
Gabi1175g00005 517 Pfam Protein kinase domain 229 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1175g00005 517 ProSiteProfiles Protein kinase domain profile. 227 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1175g00005 517 Coils Coil 475 495 - -
Gabi1175g00005 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 345 357 IPR008271 GO:0004672|GO:0006468
Gabi1175g00005 517 SMART serkin_6 227 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1175g00005 Gabi-Chr1175 34499 39341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1175g00005 228 508 Receptor kinase-like Gene Family AT2G28970 42.308 1.78e-58 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Gabi1175g00005 Pkinase 4.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1175g00005 - - aprc:113867593 809.29