Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1175g00004 ATGCAGGTCATGGCTAATCGAATTCTTTCCTCTCTGCGGTATGTCTCAGCTTCTAAACATTGTTTAGGCCTATATTGTCGCTGGCATAGAAGTATAAGTGGAATTGATGCTTCTGCTGCCGCTGCTGATGTGGATCCTATCATACCAATTATGCAAATTGATCATAGTCAGCTTCTGATTGATGGAAAATTTGTTGATGCAGCTTCTGGGAAAACTTTTCCAACCTTTGATCCTAGGACAGGAGATATAATTGCCAACGTTGCTGAAGGTGACAGTGAAGATGTAAATCGTGCTGTGCATGCTGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAGGATGTCAGCTTATGAAAGATCACGTGTAATTTTTCGCTTTGCTGATTTATTGGAAAAACACAAAGATGAAGTTGCAGCAATTGAAACTTGGGATAGTGGGAAGACTTATGAACAGGCTGCAAACATTGAGATACCTATGGTGGTACGTGTGTTTCGATATTATGCGGGTTGGGCTGATAAAATTCATGGTCTAACAGTTCCAGCTGATGGACCACACCATGTACAAACGTTGCATGAACCTATTGGTGTAGCAGGGCAAATTGTTCCTTGGAATTTCCCACTTCTTATTTATTCATGGAAGGTTGCACCTGCATTGGCATGTGGTAATACAGTTGTACTGAAAACTGCAGAGCAGACACCTCTTTCTGCCCTTTATGTGTCAAAGCTATTTCTTGAGGCAGGACTTCCTCCTGGTGTTCTAAATATTATCTCTGGCTTTGGTCCTACTGCTGGTGCAGCTTTGTGTAGCCATATGGATGTTGACAAGCTTGCTTTCACAGGATCAAGTACAACCGGGAAGATTGTACTAGGGTTGTCTGCACAAAGCAATCTGAAGCCAGTAACTCTAGAGCTAGGTGGAAAATCTCCTTTCATTGTGTGCAAGGATGCTGATGTTGATGCTGCTGTTGAGGCTGCACACACTGCTTTATTCTTTAATCAGGGACAATGTTGTTGTGCTGGTTCTCGCACATTTGTTCACGAAAGCATATATGCTGAATTTGTGGAAAAGGCAAAAGCTCGAGCCCTTAAACGTGTAGTTGGAGACCCTTTTAAAACTGGGGTTGAGCAAGGTCCTCAGATTGATTCTGTACAATTCGAGAAGATCCTGAAATACATAAGATCAGGCATTGAAAGTGGTGCTACACTAGAATCTGGTGGTCAAAGAATTGGCTCTAAAGGCTACTACATCCAACCCACTGTTTTCTCAGATGTTCAGGACAACATGTTGATAGCAAAAGATGAGATCTTTGGTCCGGTACAATCTATCTTGAAATTCAAGGATCTAGAGGAGGTTATACGAAGGGCCAATGCAACATCCTATGGCCTTGCTGCTGGAGTTTTTACTCAGAGTATGGACACTGCTAACACCTTGATGCGTGCATTGAGAGTTGGAACAGTATGGATCAACTGCTATGATGTCTTTGATGCAGCAATACCTTTTGGTGGGTTTAAGATGAGTGGACAAGGGAGAGTAAGGGGAATCTACAGCCTTAGCAGCTACCTTCAAGTTAAAGCTGCTGTCACTTCTTTGAAGAATCCAACATGGCTGTAG 1611 0.4295 MQVMANRILSSLRYVSASKHCLGLYCRWHRSISGIDASAAAADVDPIIPIMQIDHSQLLIDGKFVDAASGKTFPTFDPRTGDIIANVAEGDSEDVNRAVHAARKAFDEGPWPRMSAYERSRVIFRFADLLEKHKDEVAAIETWDSGKTYEQAANIEIPMVVRVFRYYAGWADKIHGLTVPADGPHHVQTLHEPIGVAGQIVPWNFPLLIYSWKVAPALACGNTVVLKTAEQTPLSALYVSKLFLEAGLPPGVLNIISGFGPTAGAALCSHMDVDKLAFTGSSTTGKIVLGLSAQSNLKPVTLELGGKSPFIVCKDADVDAAVEAAHTALFFNQGQCCCAGSRTFVHESIYAEFVEKAKARALKRVVGDPFKTGVEQGPQIDSVQFEKILKYIRSGIESGATLESGGQRIGSKGYYIQPTVFSDVQDNMLIAKDEIFGPVQSILKFKDLEEVIRRANATSYGLAAGVFTQSMDTANTLMRALRVGTVWINCYDVFDAAIPFGGFKMSGQGRVRGIYSLSSYLQVKAAVTSLKNPTWL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1175g00004 536 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 60 316 - -
Gabi1175g00004 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 60 524 IPR016162 GO:0016491
Gabi1175g00004 536 Pfam Aldehyde dehydrogenase family 64 525 IPR015590 GO:0016491
Gabi1175g00004 536 FunFam Mitochondrial aldehyde dehydrogenase 2 308 497 - -
Gabi1175g00004 536 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 302 309 IPR029510 GO:0016491
Gabi1175g00004 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 306 495 IPR016163 GO:0016620
Gabi1175g00004 536 SUPERFAMILY ALDH-like 50 529 IPR016161 GO:0016491
Gabi1175g00004 536 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 45 525 - -
Gabi1175g00004 536 CDD ALDH_F2BC 53 528 - -
Gabi1175g00004 536 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 330 341 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1175g00004 Gabi-Chr1175 29764 34176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1175g00004 4 536 Aldehyde Dehydrogenase Gene Family AT3G48000 72.356 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1175g00004 K00128 - gmx:100798892 952.199