LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1170g00006	ATGACAAGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAGGATACACGAAACAACTTCACTGATCATCTTTATGCTGCTCTCCATAGAAATGGCATTATTGCCTTTAGGGATGATACAAATCTTAAAAAAGGCGAATCCATAGCACCTGAGCTCATGCAAGCAATTGAAGGGTCTCAGGTTTTGATTGTCATCTTCTCAAAGAACTATGCTTCCTCAACATGGTGCTTGCAAGAACTCATAGAGTTTCTCAACTGTGTTCAAGTATCAGGGAAACACGTTCTGCCTATTTTCTATGATGTTGATCCATCTGAGGTAAGAAAACAAAGTGGAAGTTATGACAAAGCATTTGGTGAACATGAAGAAAGATTTAAAGAAGATTTAGAGAAGATGGTGGAGGTGCAAAGATGGAGAGAAGCTCTGACTCAAGTGGCCAATCTCTCTGGTTGGGATGTACGAGATAAGCCACAAAATGCGGAGATTGAAAAAATTGCTAAAGAGGTAATAAACATATTGGATGAAAATATTTCAAGCCTTCCAAATGATCTAGTTGGAATAGAATCTGCTGCAGAGGAATTAGAAAAGCTTTTACACTTGAGCTCAGTTGATGATGTTGGGTTTGTAGGAATAACCGGTATGGGAGGAATAGGAAAAACAACTCTAGCCACTCTTTTATATGAAAGAATCTCTCGTCAATATGATACTTGTTGTTTTATTGATGATGTGAGCAAAGTTTGTAGAGATTACGGTCCAGTTGGTGTAGCAAAGCAACTTCTATGTCAAACATTAAATGAAGAAAACCTTCATGTATGCAATCTTTATGATGCTACTAATTTGATAAGGCAAAGGTTATGTCATGTAAGAGCCCTTATAGTTCTTGATAATGTTGATCAAGTAGAACAACTGGAGAAATTAGTTTTGAACCGGGAATGTTTAGGTGCAGGAAGTAGAATTATCATAATTTCTAGAGACAAGCATATATTAACAGTATATGGAGTGGATGATGTTTACAACGTTAGACTCCTATGTTGTGATAGTTCTCTTAAATTATTATGTAGAAAAGCTTTCAAATGTGACGATGTTAGAACAGAGTATGAAAATTTGGCATATGATGCACTGAGTTTTGCTAACGGCCTTCCACTAGCAATTAAAGTATTGGGTTCATTTTTGTTTGGACGAGATGTCTATGAATGGAGAAGTGCATTGTTCAGATTGAGAGAAAGTTCAAGCAAAGATGTTATGGATGTGCTGCGAATTAGTTATGATGAACTTGAGGAAATGCAAAAAGAAATATTTCTAGATATTGCTTGCTTCTTCAATAACAAATGGCTGAGCGAAGTTAAGAAAATTCTAGATTGCCGTGGATTTCATCCAGATATTGGAATAAGAGATTTAATTGATAAATCACTCCTAACCGTTTCACATGATGGCCTCATTATTAAAATGCATAGTTTGTTGGAAGAGCTGGGCAAACAAATTGTTCGAGAAAATTCACCCAGAGAGCCACGAAAATGGAGCAGGCTTTGGGAGGAGGAAGATTTCTACAAGTTTACGTCGGAAGATAATACTGAAAGCAAGGTTGAAGCCGTAGTTTTGAGGGATTCAGAAACGTTGATGGCCGAAGCAGTGTCAAAATTGAATCGCATTAGATTGCTTATAATAAGTGATCGGAAAATTTCAGGAAGTCTCTCTAGTCTTTCTAATGAATTACGATATGTTCTTTGGAGTGGATACCCTTTCATGCATTTGCCATCAAGTTTTCAGCCCACAAGGCTTGTACATTTGGATTTGCGTTCTAGCAGCATCAAACAATTATGGGAAGGCAAGAAGTATTTGCCCAGTTTGAAAACTTTGGATCTCAGCAACTCTCATAATCTTATCAAGATGCCAGATCTTGGAGGGGTCCCAAATCTTGAGTGGCTGAATCTTGAAGGATGTATAAGACTAGAGCAGATCGACCCATCCACTGGTCTTCTAAGAAAGCTTATTTTCTTGAATTTGAGTGGCTGCAAAAGTCTCCACGGCTGTTCAAAAGTGTCTAATAACCTGCTCATAGATAAACTTAGGCATGCGGAGAATTCGAAGGAGCTTGATATAAGTGAAACTACTATGCACTCCCAATCAACATCCTCCATGGTCAAAAGGCTTATGTTGTTGCCTTTACAATTCTTGAAATCTAGAAAACATAAGGATTCAGCTAGTTGTTCGTTGACTTGCTTGCCTAGCTTCTCTTGTTTGAGAGATCTTAATCTAAGTTTCTGCAATCTACAACAAATCCCTGATGTTCTTGGAAGTTTATATTGTTTAGAAAGGCTAAATTTAGAGGGAAACAATTTTCTTACACTTTGTAGCCTGAAGGAGCTTTCCAAACTTGTGAATTTAAACCTGTCACATTGCAAGCACTTGAAATCTTTGCCTGAGCTCCCTTCACGTACATATTTTCCATCAAGAAGAGATCCGGTGGTAGATCCAGAATTACGCATTTTCAACTGTCCAAATTTGGATGAGAGGGAACGCTGCAATAGCATGATTTTTTCATGGATGAAACAAGTCTTTCAGGCGTGCCAAGAATCCTCTGCCCCCTTTCATAGTATTGAAATAATAATTCCAGGAAGTGAAATACCAAGGTGGTTCAACAATCAGAGTGTGGGTAACTCAATAAGCATAGACTCATCTCCCATTATGCATCACAATAATTGGATTGGCGTAGCTTGCTGTGCAGTTTTTGTGGCACATCGTTTTTCAACAAAATGGACATGTAAGGATAATGGACCTTATTTGGACATTAGATTTAAACATAAATGGAGTTGGGCACATCTCTCCAGATTGATAGTTCCTGATGCAGATCTGGTTACGGTCAAATCAGATCATACGTGGCTCATCATCTATTTCCCTTGGGCAGAATCAATTCATCTTGAAGATATCGAGACCACATATTCGTCCTTCCCCCGACAAGGTTTGCTGTTTCAGATGAAGGATTTCAGGTATAATTGGGTATCTGAGAAGGATTTGGAACAATTTACAGAGATGCATAGCACTAATTCGGCAGCTCCAAATCGCAAGGTTTTGGCCATTGATGATAAGCCACAGCCATTATGA	3099	0.3827	MTRKYDVFVSFRGEDTRNNFTDHLYAALHRNGIIAFRDDTNLKKGESIAPELMQAIEGSQVLIVIFSKNYASSTWCLQELIEFLNCVQVSGKHVLPIFYDVDPSEVRKQSGSYDKAFGEHEERFKEDLEKMVEVQRWREALTQVANLSGWDVRDKPQNAEIEKIAKEVINILDENISSLPNDLVGIESAAEELEKLLHLSSVDDVGFVGITGMGGIGKTTLATLLYERISRQYDTCCFIDDVSKVCRDYGPVGVAKQLLCQTLNEENLHVCNLYDATNLIRQRLCHVRALIVLDNVDQVEQLEKLVLNRECLGAGSRIIIISRDKHILTVYGVDDVYNVRLLCCDSSLKLLCRKAFKCDDVRTEYENLAYDALSFANGLPLAIKVLGSFLFGRDVYEWRSALFRLRESSSKDVMDVLRISYDELEEMQKEIFLDIACFFNNKWLSEVKKILDCRGFHPDIGIRDLIDKSLLTVSHDGLIIKMHSLLEELGKQIVRENSPREPRKWSRLWEEEDFYKFTSEDNTESKVEAVVLRDSETLMAEAVSKLNRIRLLIISDRKISGSLSSLSNELRYVLWSGYPFMHLPSSFQPTRLVHLDLRSSSIKQLWEGKKYLPSLKTLDLSNSHNLIKMPDLGGVPNLEWLNLEGCIRLEQIDPSTGLLRKLIFLNLSGCKSLHGCSKVSNNLLIDKLRHAENSKELDISETTMHSQSTSSMVKRLMLLPLQFLKSRKHKDSASCSLTCLPSFSCLRDLNLSFCNLQQIPDVLGSLYCLERLNLEGNNFLTLCSLKELSKLVNLNLSHCKHLKSLPELPSRTYFPSRRDPVVDPELRIFNCPNLDERERCNSMIFSWMKQVFQACQESSAPFHSIEIIIPGSEIPRWFNNQSVGNSISIDSSPIMHHNNWIGVACCAVFVAHRFSTKWTCKDNGPYLDIRFKHKWSWAHLSRLIVPDADLVTVKSDHTWLIIYFPWAESIHLEDIETTYSSFPRQGLLFQMKDFRYNWVSEKDLEQFTEMHSTNSAAPNRKVLAIDDKPQPL	1032

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1170g00006	1032	Pfam	NB-ARC domain	198	423	IPR002182	GO:0043531
	Gabi1170g00006	1032	Gene3D	Ribonuclease Inhibitor	485	836	IPR032675	-
	Gabi1170g00006	1032	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	5	703	IPR044974	GO:0006952
	Gabi1170g00006	1032	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	150	IPR035897	-
	Gabi1170g00006	1032	Pfam	C-JID domain	869	946	IPR045344	-
	Gabi1170g00006	1032	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	173	435	IPR027417	-
	Gabi1170g00006	1032	Gene3D	-	1	172	IPR035897	-
	Gabi1170g00006	1032	SUPERFAMILY	"Winged helix" DNA-binding domain	412	515	IPR036390	-
	Gabi1170g00006	1032	Gene3D	-	342	425	IPR042197	-
	Gabi1170g00006	1032	Gene3D	-	173	335	IPR027417	-
	Gabi1170g00006	1032	SUPERFAMILY	L domain-like	543	807	-	-
	Gabi1170g00006	1032	ProSiteProfiles	TIR domain profile.	3	172	IPR000157	GO:0007165
	Gabi1170g00006	1032	PRINTS	Disease resistance protein signature	610	626	-	-
	Gabi1170g00006	1032	PRINTS	Disease resistance protein signature	283	297	-	-
	Gabi1170g00006	1032	PRINTS	Disease resistance protein signature	376	390	-	-
	Gabi1170g00006	1032	PRINTS	Disease resistance protein signature	207	222	-	-
	Gabi1170g00006	1032	FunFam	Disease resistance protein (TIR-NBS-LRR class)	1	174	-	-
	Gabi1170g00006	1032	Pfam	TIR domain	4	170	IPR000157	GO:0007165
	Gabi1170g00006	1032	SMART	till_3	4	147	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1170g00006	Gabi-Chr1170	191496	198024	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1170g00006	2	822	WRKY Transcription Factor Family	AT4G12020	30.430	3.51e-86	303

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1170g00006	-		-	gmx:100820213	1100.5