Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1170g00001 ATGAAGGGTGGCATGTGGGATAAATGGAGACCAGCGGTGCTAATGGCGATAGTGCAGATCACATTTGCAGCTTGCAATATACTCTACAAGCTTACCATTTATGATGGAATGAGCACCATTATTCTTTCAGCCTACCGTCTCGCCTTCGCAGCGCTTACCACTATTCCCCTTGCTTTAGTTTTTGAGAGGCAAAGACCAAACATGACTTGGAAGGTGTTTGGTTTGGCATTTCTCAGTGGATTGTTTGGTGGAACTTTATTTCAAAACTTATTCTACGGAGCCATGACATTAGCGCCAGCAACCTTGGTGTCCGCACTCTACAACCTTATTCCTTCCATCACCTTTATCTTGGCCATTTCCATCGGTTTCGAAAAATTAAATTGGGGAGCAGCAGCAGGAAAGGCCAAGGTGTTCGGAACTATAAGTGGACTTGTTGGGGCAATGGTGCTGGCCTTTTATAAAGGGATAGTATTTGATATTTGGCCTTTTCATTTCAACCTTTATTCATTACTACCAGGGCACGAGAACGCTGACCCTGGTAGTAATGAATTGTTGGGTGCTCTAAGCGTCATAGCAAGCTGCTTCTGTTTCTCTGTGTGGCTGATCATTCAGGCTAAGATAAATGAGGTATATCCATGCTATTACACAAGCATAGCTTTGATGTGTACAATAGGAGCAATACAATCCATTATTTTTGGTCTTTGTGTTGAGAGGGATTGGAACCAATGGAAAATGGGTTGGGATGTCAGGCTCCTAACTGCGGCGTACTCGGGAATTATGGCCTCCGGATTTATGATTATTTTCATTGCATATTGCATACGAGTGAGAGGCCCTTTATTTGCATCTTCTTTCAACCCTCTAATGCTTGTGCTTGTGGCTATCGTTGCTTCTCTGACGTTGGATGAAAAATTATATTTGGGAAGTGCGATTGGATCGGTGCTGATTGTGATTGGACTATATGCGGTGCTATGGGGTAAGAGCAAAGAAATGCAAAAGATGACTCAGTCAAAGCCATCAGAAACCACTGAAGATTCCGAAGCTACGAGGCCATTGTTGGATCCATGA 1065 0.4347 MKGGMWDKWRPAVLMAIVQITFAACNILYKLTIYDGMSTIILSAYRLAFAALTTIPLALVFERQRPNMTWKVFGLAFLSGLFGGTLFQNLFYGAMTLAPATLVSALYNLIPSITFILAISIGFEKLNWGAAAGKAKVFGTISGLVGAMVLAFYKGIVFDIWPFHFNLYSLLPGHENADPGSNELLGALSVIASCFCFSVWLIIQAKINEVYPCYYTSIALMCTIGAIQSIIFGLCVERDWNQWKMGWDVRLLTAAYSGIMASGFMIIFIAYCIRVRGPLFASSFNPLMLVLVAIVASLTLDEKLYLGSAIGSVLIVIGLYAVLWGKSKEMQKMTQSKPSETTEDSEATRPLLDP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1170g00001 354 PANTHER WAT1-RELATED PROTEIN 11 336 IPR030184 GO:0016020|GO:0022857
Gabi1170g00001 354 MobiDBLite consensus disorder prediction 332 354 - -
Gabi1170g00001 354 Pfam EamA-like transporter family 12 135 IPR000620 GO:0016020
Gabi1170g00001 354 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020
Gabi1170g00001 354 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 328 - -
Gabi1170g00001 354 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Gabi1170g00001 354 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1170g00001 Gabi-Chr1170 85743 93368 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1170g00001 10 351 Nodulin-like Gene Family AT1G25270 39.884 7.34e-83 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1170g00001 - - mtr:25493309 462.996