Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1168g00009 ATGGCGATGCCGACGGGGCGGAGCAGGGTGATCGGAGACTACTTCGTCGGGAAGCAAATCGGCGCAGGGTCGTTCTCGGTGGTGTGGCACGGTAGGCACAAGGTGCACGGAACCGAAGTAGCGATAAAGGAGATCGCCACGCTTCGCCTCAACAAGAAGTTGCAGGAGAGTCTCATGTCTGAGATTTTCATCTTGAAGCGGATTAACCATCCTAATATCATCCATTTGCACGATATCATTGAGGCTCCTGGAAAGATACATCTTGTGTTAGAATACTGTAGAGGGGGAGATCTCTCTTTGTACATTCAACGCCATGGAAGGGTACCGGAGGCTACTGCAAAGCATTTTATGCAGCAGCTGGCTACTGGCCTTCAAGTTCTTCGGGACAATAACTTAATTCATAGAGATCTGAAACCGCAGAATCTTCTTCTCTCCATAAATGATGAGAAGTCGGTGCTGAAGATTGCTGACTTTGGATTTGCAAGATCTCTGCAACCTAGGGGCCTTGCAGAAACCTTGTGTGGATCACCTCTTTACATGGCTCCAGAAATCATGCAACTTCAGAAATACGATGCTAAGGCAGATCTCTGGAGTGTTGGTGCAATCTTATTTCAGCTTGTTACAGGAAGAACACCTTTTACTGGAAACAATCAAATACAGTTACTACAGAACATTATGAAATCAACAGAATTGCAGTTTCTATCTGATAACCAAAGTCTGAGTTCTGACTGCAAAGATTTGTGTCAGAAATTGCTGCGCCGTAATCCAGTGGAACGTCTAACTTTTGAAGAATTCTTTAACCACCCATTCCTTTCCCATAAGCAACCAGAACAGGATGAACCATTGAGTAGAAATTCTTCAAGGCTAGTAGGTCGGTGTTGTTCAACAGTGTCTGACCCTTTAAGAACTGAGGAAAATTATCAAGAGGATTGTTTACCTTTTATTCTAGATGATGATTCTAGTGGTCCTGAGGGGAGTCCATCCTTTTCAAGGAAGAAGTCCTCAATGAAGTCTACCTATGGATTTGATCTAAATACAAAATTAGATAAAACAGAGTCAGCATCTCGTATTGCTAATAACATTAATTGTACTTCCCGATATGGTAGTGTAATACAGCGACCTGAAAACACTACTAAAAGATTGGAAAACCATAGAATTTCGGGAAGAAATCTCATTGATCCTCTAGAATCTCCAGAACAGATATTTACAAACCATCCAAAAGTTATGGATTCACTAGAGAATATTGATCAAGATTATGTTCTTGTGTCGGGGCCCCCTATGGATGTTTCATCTTCTTCTGTGAGTGCTTCAAAGCCAAGCCATTCCCCATATAGGTCAGGTAGTTTCCCCCAAGAGTCTTCTAATACAATCACTACAGTAAGTGCTCCAATGCCAATCGGTGGTGTACCTACCAATAGCATATGCCAAATTGGAAGTTCAGGAAGTCAGGACTCTGCTCCTGGGACTTCACATGGATCAATGGATACAGGTGATGAACAACCATCAGCTCACTGCATGACAAGGGTAAAATCATTGCAACAGTGTGCGTCTACCATCACGGAATTAGTTAATGAAAAGATGGCAGCAGGGAAGCAGCTAGAAGCATTTTCTATTCAGCTTGTAATTCTCGCAATTTGTAAGCAAGCACTGCACATATGCCATACACAGGCTGCTTCAGCCATGGAAGGAAGTCCAAATCTAGAAACTTCAAGATATAGGAGGAGCACCAGCAAGAAGCTAGGTAGTCTTGATTCAGAAGAATGCCTTGATGGAAAAATCCAAAGGCCAAAGGATATATTATCCCAAATTGAAAGTGAATTTTTGAGGGAATTTGAGTATGCTGAAGAACTTGCCAAGACCATTGAGCCTGGAAATACAGAGATGCCAGATGCAATGGAGACAATATTTCAATCTGCCCTTGCTTTTGGGAGACATGGGGGTGTGAAAGAGCTCATGGGTGACATGGAAAGTGCAACTGCATTATATTCAAAAGCTGTCCATCTGTTACTTTTCCTTCTAGTGGAAGGACCATCCTTGATTCTGAATCCTCCATTTTCACTGACAAACTCAGACCGTTATAGGCTTCGGGATTACATTGATAGGCTTAATAACAGGCAAGGTTTTTCAAGGTCACAGCGAATGGCTCGTCTGAAATGTGATGATAGTCAAGGTATCCTTAAGGAAAAGTTTTAG 2193 0.425 MAMPTGRSRVIGDYFVGKQIGAGSFSVVWHGRHKVHGTEVAIKEIATLRLNKKLQESLMSEIFILKRINHPNIIHLHDIIEAPGKIHLVLEYCRGGDLSLYIQRHGRVPEATAKHFMQQLATGLQVLRDNNLIHRDLKPQNLLLSINDEKSVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGRTPFTGNNQIQLLQNIMKSTELQFLSDNQSLSSDCKDLCQKLLRRNPVERLTFEEFFNHPFLSHKQPEQDEPLSRNSSRLVGRCCSTVSDPLRTEENYQEDCLPFILDDDSSGPEGSPSFSRKKSSMKSTYGFDLNTKLDKTESASRIANNINCTSRYGSVIQRPENTTKRLENHRISGRNLIDPLESPEQIFTNHPKVMDSLENIDQDYVLVSGPPMDVSSSSVSASKPSHSPYRSGSFPQESSNTITTVSAPMPIGGVPTNSICQIGSSGSQDSAPGTSHGSMDTGDEQPSAHCMTRVKSLQQCASTITELVNEKMAAGKQLEAFSIQLVILAICKQALHICHTQAASAMEGSPNLETSRYRRSTSKKLGSLDSEECLDGKIQRPKDILSQIESEFLREFEYAEELAKTIEPGNTEMPDAMETIFQSALAFGRHGGVKELMGDMESATALYSKAVHLLLFLLVEGPSLILNPPFSLTNSDRYRLRDYIDRLNNRQGFSRSQRMARLKCDDSQGILKEKF 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1168g00009 730 FunFam Serine/threonine-protein kinase ATG1 6 310 - -
Gabi1168g00009 730 SUPERFAMILY Protein kinase-like (PK-like) 10 455 IPR011009 -
Gabi1168g00009 730 MobiDBLite consensus disorder prediction 314 336 - -
Gabi1168g00009 730 Gene3D Transferase(Phosphotransferase) domain 1 5 313 - -
Gabi1168g00009 730 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1168g00009 730 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 5 639 IPR045269 GO:0004674|GO:0006914
Gabi1168g00009 730 SMART serkin_6 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1168g00009 730 CDD STKc_ATG1_ULK_like 20 270 - -
Gabi1168g00009 730 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Gabi1168g00009 730 MobiDBLite consensus disorder prediction 475 497 - -
Gabi1168g00009 730 ProSiteProfiles Protein kinase domain profile. 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1168g00009 730 MobiDBLite consensus disorder prediction 475 503 - -
Gabi1168g00009 730 FunFam Non-specific serine/threonine protein kinase 2 94 - -
Gabi1168g00009 730 MobiDBLite consensus disorder prediction 426 458 - -
Gabi1168g00009 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1168g00009 Gabi-Chr1168 153278 161759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1168g00009 10 271 CBL-interacting serine-threonine protein kinases AT2G30360 37.313 3.31e-53 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Gabi1168g00009 Pkinase 4.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1168g00009 K08269 - gmx:100791596 1231.08