Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1164g00002 ATGGATTGTGATCAAGAAAACAAGTTCGATGATGATTTACATCAGAAGGACGATGATAAGAAAGAAGGGTTAGATCATGCCAAGAATTCCTCTGAAGAGAAAGAGAAGATGAATAGTCCAGTACCTTCTGAGTCTTCTGAAGTTGGTAATAAACCAAAGGGTAAAGAAGGGTCGCCAGATCAGAAATCTGCAGCTTCAGGAATACACAAGTGTGTGTTCTGTGGGAAGGAGTTTAAATGTGGAAAAGCGTTAGGTGGCCACAAAAGATTCCACCTTCAAGCTCAGAAGAAGAAGGAGAAGGAGGATAAAAAGGCGGCTATTAGTAATGAGATCAAGATGTCTTCTTTGATGTCTAATGGGAAACACTGTTGTTTACTTTGCGACAAGGATTTCCCATCACAAAAGTCCTTGTATGGGCATATGAGGTCCCACCCTGATAGGGTTTGGAGGGGTGTTTGCCCTCCAACAAGAACCTCTGATAAGCAAGGTTCTAGTTCCCCAAACTCTGCCTCTATAGAAGAGATTAAACATGATAATTTTGATTTTGGTGCAGTTGTTGTTGCACCAAATAAACCAGCTATTGATCTATCAAAAATTCTACCCCCAACCTGGCGTAAAACCTATAGAAGAGGCAGGGAAAGTCTTTATAGTGCTGAGACTTTTGAAGCATCTAAAATTATTATGTCTTTGTCTAAGGGTAGTTTGCCATGTGATAAGAATAAGAAAGGAAAGCAATTGATTGAATTCGAGGATGAGAAGGAGAAGGAGGAGGAGCATAGGTATGCTAAGTGGATTAGAGAGGAGTGTAATTATGTGAAGAAGATGAAAAGAGCATGGAATGGTATGAACACTCATGAAGCATCATCTAGTGGGGTGAAAGATCATCTGCAGCCAAGAGATGCATACCAATGCAACATCTGTGATAAATCATTCTCAACATTCCAAGCCCTAGGAGGACACAAATCAAGCCACAATAAAGAGAAGAACAATAAGCCTCCAAATGATGTCAACATCGGAGAATCAAGTCAATCTGGCCAAAAAAATTCACTCCCTGATCTGAATGAGGTATTTGATTTAATGGATGATGAAGAAAGTTAA 1098 0.3989 MDCDQENKFDDDLHQKDDDKKEGLDHAKNSSEEKEKMNSPVPSESSEVGNKPKGKEGSPDQKSAASGIHKCVFCGKEFKCGKALGGHKRFHLQAQKKKEKEDKKAAISNEIKMSSLMSNGKHCCLLCDKDFPSQKSLYGHMRSHPDRVWRGVCPPTRTSDKQGSSSPNSASIEEIKHDNFDFGAVVVAPNKPAIDLSKILPPTWRKTYRRGRESLYSAETFEASKIIMSLSKGSLPCDKNKKGKQLIEFEDEKEKEEEHRYAKWIREECNYVKKMKRAWNGMNTHEASSSGVKDHLQPRDAYQCNICDKSFSTFQALGGHKSSHNKEKNNKPPNDVNIGESSQSGQKNSLPDLNEVFDLMDDEES 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1164g00002 365 Gene3D Classic Zinc Finger 281 355 - -
Gabi1164g00002 365 Pfam C2H2-type zinc finger 301 326 - -
Gabi1164g00002 365 Pfam C2H2-type zinc finger 122 146 - -
Gabi1164g00002 365 Pfam C2H2-type zinc finger 69 93 - -
Gabi1164g00002 365 ProSitePatterns Zinc finger C2H2 type domain signature. 304 324 IPR013087 -
Gabi1164g00002 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 302 329 IPR013087 -
Gabi1164g00002 365 SUPERFAMILY beta-beta-alpha zinc fingers 68 144 IPR036236 -
Gabi1164g00002 365 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Gabi1164g00002 365 SMART c2h2final6 122 144 IPR013087 -
Gabi1164g00002 365 SMART c2h2final6 69 91 IPR013087 -
Gabi1164g00002 365 SMART c2h2final6 302 324 IPR013087 -
Gabi1164g00002 365 Gene3D Classic Zinc Finger 67 144 - -
Gabi1164g00002 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 144 IPR013087 -
Gabi1164g00002 365 MobiDBLite consensus disorder prediction 150 170 - -
Gabi1164g00002 365 MobiDBLite consensus disorder prediction 334 351 - -
Gabi1164g00002 365 SUPERFAMILY beta-beta-alpha zinc fingers 300 329 IPR036236 -
Gabi1164g00002 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Gabi1164g00002 365 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 110 355 IPR044653 GO:0003700
Gabi1164g00002 365 MobiDBLite consensus disorder prediction 1 65 - -
Gabi1164g00002 365 MobiDBLite consensus disorder prediction 317 365 - -
Gabi1164g00002 365 ProSitePatterns Zinc finger C2H2 type domain signature. 123 144 IPR013087 -
Gabi1164g00002 365 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1164g00002 Gabi-Chr1164 16097 17395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1164g00002 69 155 C2H2 Transcription Factor Family AT2G26940 37.838 7.99e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1164g00002 zf-C2H2_6 9.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1164g00002 - - adu:107496635 151.754