Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1164g00001 ATGGATTGTGATCAAGAAAACAAGTTCGATGATGATTTACATCAGAAGGACGATGATAAGAAAGAAGGGTTAGATCATGCCAAGAATTCGTCTGAAGAGATAGAGAAGATGAATAGTCCAGTACCTTGTGAGTCTTCTGAAGTTGGTAATAAACCAAAGGGTAAAGAAGGGTCGCCAGATCAGAAATCTGCAGCTTCAGGAATACACAAGTGTGTGTTCTGTGGGAAGGAGTTTAAATGTGGAAAAGCGTTAGGTGGCCACAAAAGATTCCACCTTCAAGCTCAGAAGAAGAAGGACAAGGAGGATAAAAAGGCGGCTATTAGTAATGAGATCAAGATGTCTTCTTTGATGTCTAATGGGAAACACTGTTGTTTACTTTGTGACAAGGATTTCCCATCACAAAAGTCCTTGTATGGGCATATGAGGTCCCACCCTGATAGGGTTTGGAGGGGTGTTTGCCCTCCAACAACAACCTCTGATAAGCAAGGTTCTAGTTCCCCAAACTCTGCCTCTATAGAAGAGATTAAACATGATAATTTTGATTTTGGTGCAGTTGTTATTGCACCAAATAAACCAGCTATTGATCTATCAAAAATTCTACCCCCAACCTGGCGTAAAACCTATAGAAGAGGCAGGGAAAGTCTTTGTAGTGATGAGACTTTTGAAGCATCTAAAATTATTATGTCTTTGTCTAAGGGTAGTTTGCCATGTGATAAGAATAAGAAAGGAAAGCAATTGATTGAATTCGAGGATGAGAAGGAGAAGGAGGAGGAGCATAGGTATGCTAAGTGGATTAGAGAGGAGTGTAATTATGTGAAGAAGATGAAAAGAGCATGGAATGGTATGAACACTCATGAAGCATCATCTAGTGGGGTGAAAGATCATCTGCAGCCAAGAGATGCATACCAATGCAACATCTGTGATAAATCATTCTCAACATTCCAAGCCCTAGGAGGACACAAATCAAGCCACAATAAAGAGAAGAACAATAAGCCTCCAAATGATGTCAACATCGGAGAATCAAGTCAATCTGGCCAAAAAAATTCACTCCCTGATCTGAATGAGGTATTTGATTTAATGGATGATGAAGAAAGTTAA 1098 0.3971 MDCDQENKFDDDLHQKDDDKKEGLDHAKNSSEEIEKMNSPVPCESSEVGNKPKGKEGSPDQKSAASGIHKCVFCGKEFKCGKALGGHKRFHLQAQKKKDKEDKKAAISNEIKMSSLMSNGKHCCLLCDKDFPSQKSLYGHMRSHPDRVWRGVCPPTTTSDKQGSSSPNSASIEEIKHDNFDFGAVVIAPNKPAIDLSKILPPTWRKTYRRGRESLCSDETFEASKIIMSLSKGSLPCDKNKKGKQLIEFEDEKEKEEEHRYAKWIREECNYVKKMKRAWNGMNTHEASSSGVKDHLQPRDAYQCNICDKSFSTFQALGGHKSSHNKEKNNKPPNDVNIGESSQSGQKNSLPDLNEVFDLMDDEES 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1164g00001 365 ProSitePatterns Zinc finger C2H2 type domain signature. 304 324 IPR013087 -
Gabi1164g00001 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 302 329 IPR013087 -
Gabi1164g00001 365 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Gabi1164g00001 365 Gene3D Classic Zinc Finger 67 144 - -
Gabi1164g00001 365 Pfam C2H2-type zinc finger 301 326 - -
Gabi1164g00001 365 Pfam C2H2-type zinc finger 122 146 - -
Gabi1164g00001 365 Pfam C2H2-type zinc finger 69 93 - -
Gabi1164g00001 365 SMART c2h2final6 122 144 IPR013087 -
Gabi1164g00001 365 SMART c2h2final6 69 91 IPR013087 -
Gabi1164g00001 365 SMART c2h2final6 302 324 IPR013087 -
Gabi1164g00001 365 MobiDBLite consensus disorder prediction 318 365 - -
Gabi1164g00001 365 MobiDBLite consensus disorder prediction 155 170 - -
Gabi1164g00001 365 MobiDBLite consensus disorder prediction 149 170 - -
Gabi1164g00001 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 144 IPR013087 -
Gabi1164g00001 365 Gene3D Classic Zinc Finger 281 355 - -
Gabi1164g00001 365 MobiDBLite consensus disorder prediction 334 351 - -
Gabi1164g00001 365 SUPERFAMILY beta-beta-alpha zinc fingers 300 329 IPR036236 -
Gabi1164g00001 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Gabi1164g00001 365 MobiDBLite consensus disorder prediction 1 33 - -
Gabi1164g00001 365 MobiDBLite consensus disorder prediction 1 65 - -
Gabi1164g00001 365 SUPERFAMILY beta-beta-alpha zinc fingers 68 144 IPR036236 -
Gabi1164g00001 365 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 96 355 IPR044653 GO:0003700
Gabi1164g00001 365 ProSitePatterns Zinc finger C2H2 type domain signature. 123 144 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1164g00001 Gabi-Chr1164 1810 3108 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1164g00001 69 155 C2H2 Transcription Factor Family AT2G26940 36.937 2.65e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1164g00001 zf-C2H2_6 9.3e-11 CL0361