Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1161g00018 ATGGGGAACAATTGTGTTGGTCCTAGCATTTCAAAAAATGGTTTTATTCAATCAGTTTCTGCAGCATTTTGGCGATCTGAATTGCCTGAAGGTTCAGTGTCTAATAGAGAATCTGCAAATGAGGAAACAACTAATGAGCCTGAATCACCCTTGCCTGTCCAAAGCAAACCTCCTGAGCAGATAACTATGCCCAAACCAGAAGCGAAACCAGAAACAAAACAGGAGGCAAAATCGGAAAAGGAACCAGAAAAGGAGAAGAAGAAACCGAAGAAACCCGGTTCTGTGAAGAGAGTTTCTAGTGCAGGACTTCGTGTCGATTCCGTGTTACTAAGAGAAACTGGTAATTTCAAGGAATTCTTCAGTCTGGGGAGAAAACTTGGACAGGGCCAGTTTGGGACAACATTCTTGTGTGTGGAGAAGGCAACAGGACATGAGTTTGCATGTAAATCTATTGCAAAGAGGAAGCTGGTAAGTGATGATGATGTTGAGGATGTGAGAAGAGAAATTCAGATAATGCACCACTTGTCTGGGCATCCTAATGTTATAGCCATCAAAGATGCTTATGAGGATGCGGTGGCTGTTCATGTTGTGATGGAATTATGTGCAGGTGGTGAGCTTTTTGATAGGATTATTCATCATGGGCATTTTACTGAAAGAAAAGCTGCTGACCTTATTAGGACTATAGTTGGGGTTGTGGAAGCTTGTCATTCTCTAGGTGTGATGCACAGAGATCTTAAACCTGAGAATTTTCTCTTTGTTAATCAGCAAGAGGATTCACTTCTCAAAACCATTGACTTTGGATTATCTGTGTTCTTTAAGCCAGGTGATGTATTTACTGATGTTGTTGGCAGCCCGTATTATGTTGCTCCAGAAGTTTTACGAAAGCGTTATGGTCCTGAAGCTGATGTTTGGAGTGCTGGGGTTATCCTTTACATTCTTTTGAGTGGAGTGCCTCCATTTTGGGCTGAAAGCGAACAAGGAATATTTGAACAGGTTCTGCATGGTGATCTTGACTTCACTTCAGATCCCTGGCCTGGAATTTCTGAAAGTGCAAAAGATTTAGTAAGGAAAATGCTTGTTCGCGACCCTAGAAGGCGGATGACTGCATATCAAGTATTATGTCATCCTTGGATTCAAGTTGATGGTGTAGCTCCTGACCACCCACTTGATTCCGCTGTATTAAGTCGCTTGAAGCAATTTTCTGCTATGAACAAGCTCAAGAAAATGGCTCTTATTATTATTGCAGAGAGCTTATCTGAAGAAGAAATAGCTGGCTTAAGAGAAATGTTCAAGATGATAGATGCAGACAACAGTGGTCAAATCACTTTTGAAGAACTTAAAGCTGGTTTGAAAAGAGTGGGTGCTAATCTTAAGGAGTCTGAAATTTATGATTTAATGCATGCGGCTGATATAGACAACAGTGGGACAATTGATTATGGCGAGTTCATTGCGGCAACATTGCATCTTAACAAGATTGAAAGAGAAGATCATCTATTTGCTGCCTTTTCTTACTTTGATAAAGATGGAAGTGGCTATATTACTCAAGAAGAACTTCAACAGGCTTGTGATGAGTTCGGCATAAAAGATGTCCGATTGGAAGAGATAATCAAGGAAATTGATCAAGATAATGATGGTCACATAGATTATAATGAATTTGTGGCTATGATGCAGAAAGGAAATCTTCCTGTGGTTGGTAAAAAGGGCCTAGAAAATAGCTTCAGCATTCGTTTCAGGGAGGCATTGAAATTGTAG 1752 0.4047 MGNNCVGPSISKNGFIQSVSAAFWRSELPEGSVSNRESANEETTNEPESPLPVQSKPPEQITMPKPEAKPETKQEAKSEKEPEKEKKKPKKPGSVKRVSSAGLRVDSVLLRETGNFKEFFSLGRKLGQGQFGTTFLCVEKATGHEFACKSIAKRKLVSDDDVEDVRREIQIMHHLSGHPNVIAIKDAYEDAVAVHVVMELCAGGELFDRIIHHGHFTERKAADLIRTIVGVVEACHSLGVMHRDLKPENFLFVNQQEDSLLKTIDFGLSVFFKPGDVFTDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLSGVPPFWAESEQGIFEQVLHGDLDFTSDPWPGISESAKDLVRKMLVRDPRRRMTAYQVLCHPWIQVDGVAPDHPLDSAVLSRLKQFSAMNKLKKMALIIIAESLSEEEIAGLREMFKMIDADNSGQITFEELKAGLKRVGANLKESEIYDLMHAADIDNSGTIDYGEFIAATLHLNKIEREDHLFAAFSYFDKDGSGYITQEELQQACDEFGIKDVRLEEIIKEIDQDNDGHIDYNEFVAMMQKGNLPVVGKKGLENSFSIRFREALKL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1161g00018 583 ProSitePatterns EF-hand calcium-binding domain. 540 552 IPR018247 -
Gabi1161g00018 583 CDD STKc_CAMK 119 377 - -
Gabi1161g00018 583 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Gabi1161g00018 583 Gene3D - 403 562 - -
Gabi1161g00018 583 ProSitePatterns Protein kinases ATP-binding region signature. 126 153 IPR017441 GO:0005524
Gabi1161g00018 583 Pfam EF-hand domain pair 438 488 IPR002048 GO:0005509
Gabi1161g00018 583 Gene3D Transferase(Phosphotransferase) domain 1 206 402 - -
Gabi1161g00018 583 FunFam Calcium-dependent protein kinase SK5 206 390 - -
Gabi1161g00018 583 ProSiteProfiles Protein kinase domain profile. 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1161g00018 583 Gene3D Phosphorylase Kinase; domain 1 122 205 - -
Gabi1161g00018 583 ProSiteProfiles EF-hand calcium-binding domain profile. 493 528 IPR002048 GO:0005509
Gabi1161g00018 583 CDD EFh 426 485 IPR002048 GO:0005509
Gabi1161g00018 583 ProSiteProfiles EF-hand calcium-binding domain profile. 531 562 IPR002048 GO:0005509
Gabi1161g00018 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Gabi1161g00018 583 SMART efh_1 497 525 IPR002048 GO:0005509
Gabi1161g00018 583 SMART efh_1 461 489 IPR002048 GO:0005509
Gabi1161g00018 583 SMART efh_1 425 453 IPR002048 GO:0005509
Gabi1161g00018 583 SMART efh_1 531 559 IPR002048 GO:0005509
Gabi1161g00018 583 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Gabi1161g00018 583 SUPERFAMILY EF-hand 418 558 IPR011992 -
Gabi1161g00018 583 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Gabi1161g00018 583 Pfam EF-hand domain pair 496 557 IPR002048 GO:0005509
Gabi1161g00018 583 MobiDBLite consensus disorder prediction 31 50 - -
Gabi1161g00018 583 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Gabi1161g00018 583 FunFam Calcium-dependent protein kinase 1 386 560 - -
Gabi1161g00018 583 PANTHER SERINE/THREONINE-PROTEIN KINASE 111 552 - -
Gabi1161g00018 583 Pfam Protein kinase domain 121 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1161g00018 583 CDD EFh 497 557 IPR002048 GO:0005509
Gabi1161g00018 583 FunFam Calcium-dependent protein kinase 1 122 205 - -
Gabi1161g00018 583 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Gabi1161g00018 583 MobiDBLite consensus disorder prediction 28 98 - -
Gabi1161g00018 583 MobiDBLite consensus disorder prediction 66 89 - -
Gabi1161g00018 583 SMART serkin_6 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1161g00018 583 SUPERFAMILY Protein kinase-like (PK-like) 120 379 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1161g00018 Gabi-Chr1161 70712 81474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1161g00018 1 583 EF-hand Containing Proteins AT5G04870 76.375 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1161g00018 Pkinase 3.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1161g00018 K13412 - gmx:100797449 1017.3