Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1157g00001 ATGGCTGCTTCTTTCCTAATAGAGACTCTGGTTTTGAATGCTCAACGTGAGGGGATGCTTATGGACGGCGGCGTTTTGGTCTTAGATTCATTCAACCACAACATACAAAGAAGCAATAGACGATCTCGAGCGGAATTGGGTTACAACCAAAACATGCAAAGAAGCAATAGACGATCTCGTCGTGAGTTGGGTTACAACCAAAACATGCAAAGAAGCAATAGACGATCTCGTCGTGAGTTGGGTTACAACCAAAACATGCAAAGAAGCAATAGACGATCTCGTCGTGAGTTGGGTTACAACCACAACATGCAAAGAAGCAATATCCGGTCTCGTCTGGAATTGGGTTACAACCACAACATGCAAAGAAGCAATATCCGTTCTCGTGGTGAGTTGTTTTACAACCAAAACATACAAAGAAGCAATAGACGATCTCGTGCTGAGTTGGGTTACAACCACAACATGCAAAACCGCAATATCCGATCTCGTCTAGAATTGGGTTACAACCTTAGCATGCTAAGCAACGGTAGATATTCTGTTTACCACTTGGATTCGCTGGACTTGGTTTACAACCACAACATGCAGAACAATGTAACAGATCAAAGGGGTTATGTCTTTGGTGGTTCTGTAGACTTGGATGGTGGAGTTTCAAGGGTGGATCAGTCCACAACACAAGAATCTTTTCAAAATCTTGAAGAAGTCACGATTGAAGCAGAGTCTTCTTCCATCACAGAAGATTGTTCTATTTGTCTCGGGGAGATTGGGTCAAGAGCAATTGGCTTGCCTTGCTCACACTTGTTTCATCGGGATTGCATCACTAAGTGGCTCACGATTCGCAATACATGTCCTTTATGTAGATGCAGTGTCTTGTCTAGGAATTAA 879 0.43 MAASFLIETLVLNAQREGMLMDGGVLVLDSFNHNIQRSNRRSRAELGYNQNMQRSNRRSRRELGYNQNMQRSNRRSRRELGYNQNMQRSNRRSRRELGYNHNMQRSNIRSRLELGYNHNMQRSNIRSRGELFYNQNIQRSNRRSRAELGYNHNMQNRNIRSRLELGYNLSMLSNGRYSVYHLDSLDLVYNHNMQNNVTDQRGYVFGGSVDLDGGVSRVDQSTTQESFQNLEEVTIEAESSSITEDCSICLGEIGSRAIGLPCSHLFHRDCITKWLTIRNTCPLCRCSVLSRN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1157g00001 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 286 - -
Gabi1157g00001 292 Pfam Ring finger domain 245 285 IPR001841 -
Gabi1157g00001 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 290 IPR013083 -
Gabi1157g00001 292 ProSiteProfiles Zinc finger RING-type profile. 246 285 IPR001841 -
Gabi1157g00001 292 SMART ring_2 246 284 IPR001841 -
Gabi1157g00001 292 SMART ringv_2 245 285 IPR011016 GO:0008270
Gabi1157g00001 292 MobiDBLite consensus disorder prediction 41 97 - -
Gabi1157g00001 292 CDD RING-H2_PA-TM-RING 245 285 - -
Gabi1157g00001 292 SUPERFAMILY RING/U-box 245 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1157g00001 Gabi-Chr1157 13917 14795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1157g00001 232 285 C3H Transcription Factor Family AT5G15820 50.000 2.95e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1157g00001 - K22378 lang:109353994 78.5666