Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1156g00011 ATGGATGTCGATTCCTCGATGGTGCCGGAGGCCGATCACGATCCGGCCGTGCAGAACCACGCCGCCTCTGCTCCGGCACAGGCTGCGATAGATGGAGAACAGTTGGCGGAGCCGCCGTCGTCCGGAGGCGGATCTCCGGCGCAGCCGTCGGTTCAGCAACAGCAGCAGCAGCAGCAGGTGTCTGCTCAGGTGCAGCAGAGTCCGGTGGTTGGGCCGAGGCTGGCACCAACTTACACTGTGGTGGATGCAATTTTAGAGAAGAAGGAGGACGGGCCGGGGCCGAGGTGCGGCCACACGTTGACGGCGGTGGCGGCTGTGGGAGAGGAGGGGACGCCTGGGTACATTGGTCCGAGGTTGATTCTGTTCGGTGGTGCCACTGCACTTGAAGGGAATTCTGCGGCTTCAGGGACTCCTTCATCCGCTGGAAATGCTGGCATACGTTTAGCTGGTGCCACAGCTGATGTCCATTGTTATGATGTCTTGACTAATAAATGGTCTAGGATAACTCCCTTTGGAGAACCTCCAACACCAAGGGCTGCACATGTGGCGACTGCTGTGGGAACCATGGTGGTTATTCAGGGCGGTATTGGTCCTGCTGGTTTGTCAGCAGAGGACCTTCATGTTCTTGATCTCACTCAGCAATGGCCCCGCTGGCATAGAGTGTCTGTTCAAGGCCCTGGACCAGGGCCACGTTATGGACATGTAATGGCTTTGGTGGGGCAGAGGTATCTTATGGCAATTGGAGGCAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCCTTGGACACAGCTGCCAAACCTTATGAATGGCGCAAGTTGGAACCAGAAGGAGAGGGTCCACCTCCATGCATGTATGCAACTGCAAGTGCACGCTCTGATGGGCTTCTTCTGCTTTGTGGAGGAAGGGATGCCAATAGTGTTCCGTTGGCAAGTGCATATGGACTTGCTAAGCATAGAGATGGTCGTTGGGAATGGGCAATTGCCCCAGGTGTCTCACCATCTCCAAGATATCAGCATGCAGCGGTATTTGTTAATGCAAGGCTCCATGTGTCTGGTGGTGCACTTGGTGGAGGACGGATGGTTGAAGACTCATCAAGTGTTGCAGTATTGGACACTGCTGCTGGTGTTTGGTGTGATACAAAATCTGTTGTTACCAGTCCAAGAACTGGTAGATACAGTGCTGATGCTGCTGGAGGAGATGCAGCAGTTGAATTGACTCGGCGTTGTAGGCATGCAGCTGCTGCTGTTGGGGACCTAATTTTTATTTACGGTGGTTTACGTGGGGGAGTCTTGCTAGATGACCTACTTGTTGCTGAAGATCTTGCTGCAGCTGAAACAACAACTGCTGCTTCACATGCTGCAGCAGCAGCAGCTGCATCTAATTTACAAGTAGGACGCTTACATGGACGATATGCATTTGTTGATGATAGGATGAGGCAAACAATGCCTGAAACCCCTGCTGATGGTTCAGTTGTTTTGGGAAATCCAGTCGCACCCCCAATGAATGGTGACATTTATACTGATATCAGCACTGAAAATGCCATGCTTCAAGGACCTCGGCGAACTACCAAAGGAGTTGAGTATCTGGTCGAAGCATCTGCTGCAGAAGCTGAAGCTATCAGTGCCACACTGGCTGCTGCCAAGGCTCGACAAGAGAATGGAGAAGTTGAATTGCCTGACAGAGACCGTGGGGCTGAGGCTACCCCAAGTGGGAAACAAACATCTTCCTTGCTTAAGCCTGATTCTTCTGGGTCAAATAACATTGCTTCTGGTGGAGTTCGGCTGCATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGAGCATTAGGTGGCATGGTTAGGCAGCTTTCAATAGATCAATTTGAAAATGAAGGCAGGCGGGTCAGTTATGGGACTCCAGAAAATGCAACTGCTGCTAGAAAATTATTAGATCGGCAGATGTCCATAAATAGTGTGCCAAAAAAGGTCATAGCACACCTCTTAAAGCCTCGTGGGTGGAAACCACCAGTTCGCCGACAATTTTTCTTAGACTGCAATGAAATTGCTGATCTTTGTGATAGTGCTGAGCGGATATTTTCAAGTGAACCAAGTGTCTTACAACTTAGGGCACCGATTAAAATATTTGGTGATTTACATGGGCAGTTTGGGGATCTCATGCGCCTGTTTGATGAGTACGGTGCACCATCAACTGCTGGTGACATAGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATCGGGGTCAGCACAGCTTGGAAACTATAACCCTTCTTCTTGCTCTGAAGGTTGAGTATCCTAACAATATACATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCCCTTTTCGGTTTCCGAATTGAGTGCATTGAGAGGATGGGTGAAAGAGATGGAATTTGGACATGGCATCGGATAAACCGACTGTTTAATTGGCTTCCTCTAGCGGCTCTAATTGAGAAAAAAATTATTTGCATGCATGGTGGTATTGGTCGTTCAATAAATCACTTGGAACAGATTGAGAATATTCAGCGTCCAATTCCAATGGAAGCAGGGTCAATTGTGCTTATGGATCTACTGTGGTCTGATCCTACAGAGAATGATAGTGTGGAAGGACTGCGGCCAAATGCTAGAGGTCCTGGATTAGTTACTTTTGGGCCTGATCGTGTCATGGAATTTTGCAACAACAATGATCTTCAGCTGATTGTTCGTGCACATGAATGTGTGATGGATGGGTTTGAGCGTTTTGCCCAGGGACATCTGATCACACTTTTCTCAGCTACAAATTATTGTGGTACCGCAAATAATGCTGGGGCAATATTAGTTTTGGGTAGGGACCTTGTTGTGGTTCCAAAACTGATTCATCCATTACCACCTGCAATCTCTTCACCAGAAACGTCGCCAGAACGTCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAACAGACCACCAACACCAACTAGAGGCCGTCCCCAAGTAACAAATGACCGAGGTTCGCTCGCTTGGATATAG 3030 0.4888 MDVDSSMVPEADHDPAVQNHAASAPAQAAIDGEQLAEPPSSGGGSPAQPSVQQQQQQQQVSAQVQQSPVVGPRLAPTYTVVDAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQWPRWHRVSVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTTAASHAAAAAAASNLQVGRLHGRYAFVDDRMRQTMPETPADGSVVLGNPVAPPMNGDIYTDISTENAMLQGPRRTTKGVEYLVEASAAEAEAISATLAAAKARQENGEVELPDRDRGAEATPSGKQTSSLLKPDSSGSNNIASGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPENATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNIHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHLEQIENIQRPIPMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVTNDRGSLAWI 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1156g00011 1009 PRINTS Serine/threonine phosphatase family signature 774 798 IPR006186 GO:0016787
Gabi1156g00011 1009 PRINTS Serine/threonine phosphatase family signature 812 838 IPR006186 GO:0016787
Gabi1156g00011 1009 PRINTS Serine/threonine phosphatase family signature 741 768 IPR006186 GO:0016787
Gabi1156g00011 1009 PRINTS Serine/threonine phosphatase family signature 902 922 IPR006186 GO:0016787
Gabi1156g00011 1009 PRINTS Serine/threonine phosphatase family signature 924 940 IPR006186 GO:0016787
Gabi1156g00011 1009 PRINTS Serine/threonine phosphatase family signature 706 733 IPR006186 GO:0016787
Gabi1156g00011 1009 MobiDBLite consensus disorder prediction 569 591 - -
Gabi1156g00011 1009 ProSitePatterns Serine/threonine specific protein phosphatases signature. 775 780 IPR006186 GO:0016787
Gabi1156g00011 1009 FunFam Serine/threonine-protein phosphatase 642 982 - -
Gabi1156g00011 1009 SUPERFAMILY Kelch motif 150 439 IPR015915 GO:0005515
Gabi1156g00011 1009 SUPERFAMILY Metallo-dependent phosphatases 663 969 IPR029052 -
Gabi1156g00011 1009 MobiDBLite consensus disorder prediction 552 591 - -
Gabi1156g00011 1009 Gene3D - 642 981 IPR029052 -
Gabi1156g00011 1009 MobiDBLite consensus disorder prediction 985 1009 - -
Gabi1156g00011 1009 MobiDBLite consensus disorder prediction 554 568 - -
Gabi1156g00011 1009 SMART pp2a_7 678 962 IPR006186 GO:0016787
Gabi1156g00011 1009 MobiDBLite consensus disorder prediction 1 68 - -
Gabi1156g00011 1009 FunFam Serine/threonine-protein phosphatase 275 475 - -
Gabi1156g00011 1009 CDD MPP_Bsu1_C 658 960 IPR041758 -
Gabi1156g00011 1009 Gene3D - 74 274 IPR015915 GO:0005515
Gabi1156g00011 1009 Pfam Calcineurin-like phosphoesterase 706 913 IPR004843 GO:0016787
Gabi1156g00011 1009 Pfam Kelch motif 336 382 IPR011498 GO:0005515
Gabi1156g00011 1009 MobiDBLite consensus disorder prediction 985 1000 - -
Gabi1156g00011 1009 FunFam Serine/threonine-protein phosphatase 74 271 - -
Gabi1156g00011 1009 Gene3D - 275 469 IPR015915 GO:0005515
Gabi1156g00011 1009 MobiDBLite consensus disorder prediction 41 68 - -
Gabi1156g00011 1009 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1009 - -
Gabi1156g00011 1009 PIRSF STPPP_BSU1 43 1009 IPR012391 GO:0004721|GO:0009742
Gabi1156g00011 1009 Pfam Galactose oxidase, central domain 230 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1156g00011 Gabi-Chr1156 97626 113189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1156g00011 670 905 Calmodulin-binding Proteins AT5G63870 29.412 1.71e-27 112