Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1156g00002 ATGGATGAAATTGAGGTTCCTCCTCATTTCCTATGTCCCATTTCCCTACAACTTATGAGAGACCCTGTCACCGTTTGCACAGGAATCACTTACGATAGAGAAAACATAGAGAGATGGTTATTTTCATGCAAGAACAAAACATGCCCTGTTACTAAATTGTCTCTGTTAGACACTGATCTTACCCCAAACCACACTCTACGCCGTTTGATCCAAGCTTGGTGCACCCTTAATGCATCTCTTGGAGTTGAACGCATTCCAACTCCAAAGCCACCCATTGATAGAACTCAAATTGTCAAAATCCTCGCAGAAGCAAAAAAGTTCCCAGACAAGCAACTCGAATGCATTAGAAGGCTTAGATCTATTGTTTTTGAGGGTGAAAGGAACAAAAACTGTTTGGAATCTGCAGGAGCAATTGACTTCTTGGCTTCAACCATGAAGAATATACAAGAAGATTCAACTGTTCTAAGTGAAGCAGCTATTGAAGTCTTGTTTCATCTAAACCCTTCTGAAGCTCAGCTTAAGAATCTGATAAACAATGAGGGCATTCAATTTATTGAGTCTTTGTTTCAAGTTTTGAGGCTTGGGAACTACCAATCTAGAGCTTATGCAACAATGCTATTGAAGTCAGCATTTGAGGTAGCTGATCCAATCCAATTGATCAATGTCAAAACCGTATTGTTTGTGGAAATAATGAGGGTGCTACGTGATCATATTTCACAGAAGGCTACAAAGGCTGCATTGAAGCTTATTGTGGAGCTTTGTCCATGGAGAAGAAACAGAATCAAAGCAGTTGAGGGTGGCACAGTTTCAGTCCTCATTGAGCTTCTTCTTGATGCTACAGAAAGAAGAACATGTGAACTCATGCTAATAGCTTTGGATCAACTTTGTGGTTGTGCAGAAGGGAGAGCAGAGTTGTTGAATCATGGGGCAGGAGTGGCCATTGTGTCTAAGAAAATTCTAAGGATTTCTCATGTGGCAAGTGATAGAGGTGTTAGAATTTTGTCCTCTATTTGTAGGTATTCTGCAAATTCTAGAGTCCTTCATGAAATGTTGCAAGTTGGGGCTGTGTCAAAGTTATGTTTGGTGCTTCAAGTGGATAGCAGTTTCAAGACAAAGGAGAGGGCCAAGGAGATACTCAAATTGCACTCCTCGGTTTGGAAGAATTCCCCATGTATTCCTGTACCTTTGCTATCATCCTATCCATGA 1206 0.408 MDEIEVPPHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNKTCPVTKLSLLDTDLTPNHTLRRLIQAWCTLNASLGVERIPTPKPPIDRTQIVKILAEAKKFPDKQLECIRRLRSIVFEGERNKNCLESAGAIDFLASTMKNIQEDSTVLSEAAIEVLFHLNPSEAQLKNLINNEGIQFIESLFQVLRLGNYQSRAYATMLLKSAFEVADPIQLINVKTVLFVEIMRVLRDHISQKATKAALKLIVELCPWRRNRIKAVEGGTVSVLIELLLDATERRTCELMLIALDQLCGCAEGRAELLNHGAGVAIVSKKILRISHVASDRGVRILSSICRYSANSRVLHEMLQVGAVSKLCLVLQVDSSFKTKERAKEILKLHSSVWKNSPCIPVPLLSSYP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1156g00002 401 SUPERFAMILY RING/U-box 3 77 - -
Gabi1156g00002 401 CDD RING-Ubox_PUB 7 60 IPR045210 -
Gabi1156g00002 401 Gene3D - 87 390 IPR011989 -
Gabi1156g00002 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Gabi1156g00002 401 SUPERFAMILY ARM repeat 107 380 IPR016024 -
Gabi1156g00002 401 PANTHER WDSAM1 PROTEIN 3 393 IPR045185 GO:0061630
Gabi1156g00002 401 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Gabi1156g00002 401 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Gabi1156g00002 401 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Gabi1156g00002 401 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1156g00002 Gabi-Chr1156 37807 39012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1156g00002 2 401 U-box Gene Family AT2G35930 55.198 1.11e-163 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1156g00002 - - gmx:100778012 682.945