Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1156g00001 ATGGCTGAAATTGAAGTTCCTCAATTTTTCGTTTGTCCCATTTCGCTTCAGATCATGAAGGACCCTGTGACGACCATTGCAGGCATAACATACGACAGAGAAAGCATCGAGCACTGGTTGCTAACTGCAAAAGATTGTGTGTGTCCTGTTTCAAAGCAACCATTACAAAGAAACTCAGAGTTCTTGACACCTAACCACACACTTCGAAGGCTAATCCAAGCATGGTGCTCTTCAAACGCAGTCAATGGAGTTGACCAGATTCCAACCCCGAAATCCCCTTTGGAAAAGACTCACGTTGAGAAACTTGTCAAGGATCTCGAAATTCCACGCTTCTTTCTAATGTCATTGGAAAAATTGCATGATCTAGCAACAGAGAGTGAGAGGAACCGAAGGTGCATGGCTTCATCAGGTGTAGCCAAAGCTATGGTTCACTTGATTACAAAGAGTTTCAAGCAAGGTAACACAACGAGCCTTGAAGAATCTCTGAGAATTCTTCGTCTACTCTGTAGTTCAGACATGGTCGACAACATGAAACACTTGGTTGGTGAAAACTTTGACTTTCTCAACTCGTTGACTTGGATTTTGCAACTTGAAATGGATAACGATGTCAAGATGATAAACGAAGCAATGCCTATACTGAAATTGGCAATTGAAGTCAAAGATTCAACCCCTTTAGGAAATTTAAAGCTTGAATTCTTCAGACCAATTGTAAGTGTATTAAGAAATAGAGCAATCTCTCAACATGCTATTAAATCTGCGTTGCATGTACTTATAGAAACGTGCCCTTTAGGTAGAAATAGGATGAAGATTGTGGAAGCAGGTGCAGTAACAGAACTCATTGAGCTTGTACTTGAAAAACAGGAAAAGAACTTAACCGAACTCATGTTTATCCTTTTGGCTCATTTGTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTGCAACACGCAGCGGGTATTGCAGTGCTTTCTAAAAGGACATTAAGGGTTTCACCAGCAACAGATGATCGAGCTCTGCATATATTTTCCTTAATAGCTAAGTTTTCAGCAACAAATGACGTTGTTCAAGAGATGTTGAAGGTTGGAGCTGTGTCAAAGCTTTGTATGGTGATGCAAGCAGATTGTGCTTCCTATTTGAAAGAAAAAGCTAGAGGCATCCTTAGGTTACACTCCAAAGCATGGAACAATTCTCCTTGTATTCAAGTATATTTGTTAACCAGATACCAAAGGTGA 1230 0.4041 MAEIEVPQFFVCPISLQIMKDPVTTIAGITYDRESIEHWLLTAKDCVCPVSKQPLQRNSEFLTPNHTLRRLIQAWCSSNAVNGVDQIPTPKSPLEKTHVEKLVKDLEIPRFFLMSLEKLHDLATESERNRRCMASSGVAKAMVHLITKSFKQGNTTSLEESLRILRLLCSSDMVDNMKHLVGENFDFLNSLTWILQLEMDNDVKMINEAMPILKLAIEVKDSTPLGNLKLEFFRPIVSVLRNRAISQHAIKSALHVLIETCPLGRNRMKIVEAGAVTELIELVLEKQEKNLTELMFILLAHLCSCADGREQFLQHAAGIAVLSKRTLRVSPATDDRALHIFSLIAKFSATNDVVQEMLKVGAVSKLCMVMQADCASYLKEKARGILRLHSKAWNNSPCIQVYLLTRYQR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1156g00001 409 SUPERFAMILY RING/U-box 4 83 - -
Gabi1156g00001 409 Gene3D - 108 399 IPR011989 -
Gabi1156g00001 409 SUPERFAMILY ARM repeat 226 379 IPR016024 -
Gabi1156g00001 409 CDD RING-Ubox_PUB 7 55 IPR045210 -
Gabi1156g00001 409 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Gabi1156g00001 409 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Gabi1156g00001 409 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Gabi1156g00001 409 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Gabi1156g00001 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1156g00001 Gabi-Chr1156 21425 22654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1156g00001 3 407 U-box Gene Family AT2G35930 41.320 1.10e-106 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1156g00001 - - gmx:100778547 649.432