LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1152g00002	ATGTCAGGGCAAGCATCATTCTCCTGCTCCTCTTCCTTTGGCTATGGCTTCACTTATGATGTGTTTCTCAACTTTAGAGGCTTAGATACTCGCCACGGTTTCACTGGCAATCTCTACAAAGCTCTCAATGACAGAGGAATCCACACTTTCATTGATGATGAGAGGATTCAAAGAGGGGAGGAAATCACATCATCACTTGCAAATGCAATTGAAGAGTCCAGGATTGCTATCCCTGTGTTCTCTAAGAACTATGCATCTTCTTCATTTTGTTTAGATGAACTTGTGATGATCATTGATTGCATTAAGGCAAAGGGTAGGTTGGTTTTGCCAATTTTTTATGATTTGGATCCTTCTCATGTGAGACATCAAAGTGGGAGTTATGGAGAAGCACTTGCTAAGCATGAGGAGAGGTTCAAACATAACAAAGAGGAGTTCAACGAAAACATGGAGAGATTGGTGAAATGGAAGATGGCTCTTAAGCAAGCAGCTAACTTATCCGGCAAGGATTTCAAACTTGGGAACGAATATGAACATGAGTTTATAGGGAAGATTGTTAAAGAGGTCTGCAACAAGATTAATCGTGCTCCTTTACATGTTGCGGATTACCCAGTTGGATTGGAGTCTCGAGTCCTAGAAGTAAACTCGCTTCTGAATGTTGGATTTGATGATGGAGTTCACATGGTAGGGATCTATGGAATCGGTGGAATGGGTAAAAGAACAATTGCTCTAGCAGTTTATAATTATATTGCTGACCTGTTTGAAGGTTTATGTTTTCTTGATAATGTGAGGGAGAATTCAATCAAATATGGATTAGTTCATCTCCAAGAGATGCTTCTTGCAGAAATTGTTGGAGAGAAGGAAATTAGGTTAGGAAGTGTAAATAAAGGAATTTCAATAATAAAGCATAGGCTTCACCGAAAGAAAGTTCTTTTGATTCTTGATGATGTTAGCGAACTTGAGCAGTTGCGGGCAATTGCTGGAGGATCTGATTGGTTTGGTTCTGGAAGCAGAGTGGTCATAACAACTAGGGACAAGCATTTGTTAATAAGCCATGGGGTTGAAAGAATTTTTGAGTTAGAGGGTTTAAATGATAAAGAAGCTCTTGAATTGCTTAGTTGGAATGCTTTTAAAACTAACATAGTTGATCCCAGTTATGTGAACATTTTAAACCGTGCCATAAGTTATGCTTCTGGCCTTCCATTGGCATTGGAAGTAATAGGTTCCAATTTGTTTGGAAAAAGAATAGAAGAATGGGAATCTGCATTAAATCGGTATGAAAGGATTCCTGATAAAGGGATCCAAAAGATACTCAAAGTGAGCTTTGATTCTTTGGAGGAAGATCAGCAGAGAGTTTTTCTTGACATTGCTTGTTGCTTCCAAGGTTATGAATTGGCAGAAGTTGAAGATATACTTCAAGCTCATCATGGTGTTTGCATGAAATATGGTATCAATTTGTTGGTTCAAAAATCCCTTATAAAGACTGATCAGATTGATCATGTGCTATTACATGACTTGATACAAGATATGGGTAGAGAAATTGTTCGACTCGAATCACCGGAAAAGCCTGGAAAACGCAGTAGGTTATGGTTCCATGAAGATATTGTTCAAGTTCTAGAAGAAAATGGGGGAAGTAGTAAAACTCAAATCATAAATCTGTCAATCTCCAAATCTGAAGAAGTAGTAGAATGGGATGGAGAGGCCTTCAAGAAGATGAAAAACCTGAAAACACTCATCATTAAAAAAGGTCATTTTTCTGAAGGTCCGAAACATCTTCCAAATAGTTTAAGAGTGCTGGAATGGTGGGGATATCCATCACAGTCTTTACCATCTGATTTTCATCCAAAGAAATTAGTTATTTTCAAGTTACCCCACAGTTCCTTTATGTCACGGGACTTGTCCATGTTACTGAGGAAGATGTTAGTGAATGTCAGAGTTTTGAATTTTGACAAATGTGAATACATAACACACATACCTGATGTATCTGGTGTCCCATATTTAGAAAAATTATCATTTAGTCGTTGTAAGAATTTAATCAAAATTGATGAATCGGTTGGATTCTTGGATAAACTTAGAATCTTGGATGCTCAAGGTTGCATCAAGCTAGGGAGTTTTCCACCCATCAAGTTGACCTCTCTTGAAGAACTCAATCTTTCATATTGCTCAAGTCTTGAGAACTTTCCAGAGTTAGTAGGAAAGATGGAAAACATGAAACACCTTAGTTTGATAGACACTAACATAAGAGAATTGCCATTTTCTATTCAAAATCTTACTCAGCTTCTAAGTTTACAACTGCGAGAGTGTGGAATGGTTCAGATACCAAGTAGCATTGTCATGTTGCCAGAACTAGAAGAGTTAAGTGTTTGTGAATGTGAAGGGTTGAAATTGTATGAACAAGAGAAAGGTGAAGTGCAAGTGAGCTCAAAGGTGTGTTCAAGAATAGAATGTGTTGATCTGAGGAAGTGCAATATTTCAGATGAGTTCCTTCCAATAATTCTGGCTTGGTTTGCCAATGTTAAACAGTTAGACTTGTCAGGGACTAATTTCACTATTCTTCCTGCATGCATCAAAGAATGTCACTTTTTGTGGGAAGTAAGATTGGACAATTGTGAGAATCTTCAAGAAATTAAAGGGGTTCCTCCTAACATAAAACGGTTGTCTGCTAGAAACTGCACATCATTGACTTCCTCATGTAGAAGCATGTTACTAGATGAGGAATTGCACGCGGAGGGTGGAGACAAGACATTTATTTTGCCAGGGAAAAAGATTCCAGAATGGTTTGAGCATAGGAGCAGGGAACCAACAATTTCTTTCTGGTTTCGTAACAAGTTCCCTGCTTTGTCTCTGTGTATTATTACTCGAAAGAATAATAAGCAACTTAAAGATGTTTATTCTGCCCCATTCGGTTTTCACCATGAATTAATCATCAATGGAAATAGAGAGTTCCCACTTAACCAAGGGTATTACTCTTGGATCTCAGAAGTAGATGATCACATAGTAATTTTTGATATAAACTTGGAAGATAATGTAGATCTAGTAGTCTTAGAAAATTCATGGAATCATGTGGTGTTTTCCATTGATATCCCTGAAAGGAAGCCTATGGATATATGGACCTTACAAACTGGACTTCATGTATTCAAAAAAAGAAATAACATGAAGGATATCCTATTCACTTATCAGCACATGGAGCAGGACACAGAGTGGCCTTCTTTGCTTACAACTCCAGCATTGAATGCTAATGTGAACTCGGATTCAAATTCAATGGTGTCAAAGTGGATAATAAGTAGCACCACTAGTTTCCAAGGTATGCAAGAGAAACAAAATTTAACCTCCATTGTCCAACAAAGCTTTGAAGGCTGTGAAAGCGTAAATGAAGCCAAAGGAAAAGGAATGATAACATGCAACAGCAAGGATGAGGAGCACAATGAAAGGAATCCATTATTGGAGCTGTTATCAAAGACAAAGGAGTATCAGATGGCAAGTGACAAAAACCAACATGGCTCAAATGAAGAAGAGAACATGTGTTGGGATCCGATGGAATTGGAATGGCAAGTAACACATTCAAAGCATCTTGAGTGA	3576	0.3792	MSGQASFSCSSSFGYGFTYDVFLNFRGLDTRHGFTGNLYKALNDRGIHTFIDDERIQRGEEITSSLANAIEESRIAIPVFSKNYASSSFCLDELVMIIDCIKAKGRLVLPIFYDLDPSHVRHQSGSYGEALAKHEERFKHNKEEFNENMERLVKWKMALKQAANLSGKDFKLGNEYEHEFIGKIVKEVCNKINRAPLHVADYPVGLESRVLEVNSLLNVGFDDGVHMVGIYGIGGMGKRTIALAVYNYIADLFEGLCFLDNVRENSIKYGLVHLQEMLLAEIVGEKEIRLGSVNKGISIIKHRLHRKKVLLILDDVSELEQLRAIAGGSDWFGSGSRVVITTRDKHLLISHGVERIFELEGLNDKEALELLSWNAFKTNIVDPSYVNILNRAISYASGLPLALEVIGSNLFGKRIEEWESALNRYERIPDKGIQKILKVSFDSLEEDQQRVFLDIACCFQGYELAEVEDILQAHHGVCMKYGINLLVQKSLIKTDQIDHVLLHDLIQDMGREIVRLESPEKPGKRSRLWFHEDIVQVLEENGGSSKTQIINLSISKSEEVVEWDGEAFKKMKNLKTLIIKKGHFSEGPKHLPNSLRVLEWWGYPSQSLPSDFHPKKLVIFKLPHSSFMSRDLSMLLRKMLVNVRVLNFDKCEYITHIPDVSGVPYLEKLSFSRCKNLIKIDESVGFLDKLRILDAQGCIKLGSFPPIKLTSLEELNLSYCSSLENFPELVGKMENMKHLSLIDTNIRELPFSIQNLTQLLSLQLRECGMVQIPSSIVMLPELEELSVCECEGLKLYEQEKGEVQVSSKVCSRIECVDLRKCNISDEFLPIILAWFANVKQLDLSGTNFTILPACIKECHFLWEVRLDNCENLQEIKGVPPNIKRLSARNCTSLTSSCRSMLLDEELHAEGGDKTFILPGKKIPEWFEHRSREPTISFWFRNKFPALSLCIITRKNNKQLKDVYSAPFGFHHELIINGNREFPLNQGYYSWISEVDDHIVIFDINLEDNVDLVVLENSWNHVVFSIDIPERKPMDIWTLQTGLHVFKKRNNMKDILFTYQHMEQDTEWPSLLTTPALNANVNSDSNSMVSKWIISSTTSFQGMQEKQNLTSIVQQSFEGCESVNEAKGKGMITCNSKDEEHNERNPLLELLSKTKEYQMASDKNQHGSNEEENMCWDPMELEWQVTHSKHLE	1191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1152g00002	1191	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	192	455	IPR027417	-
	Gabi1152g00002	1191	Gene3D	-	18	190	IPR035897	-
	Gabi1152g00002	1191	Gene3D	-	361	445	IPR042197	-
	Gabi1152g00002	1191	Gene3D	Ribonuclease Inhibitor	528	725	IPR032675	-
	Gabi1152g00002	1191	Pfam	TIR domain	19	194	IPR000157	GO:0007165
	Gabi1152g00002	1191	Gene3D	-	191	354	IPR027417	-
	Gabi1152g00002	1191	PRINTS	Disease resistance protein signature	396	410	-	-
	Gabi1152g00002	1191	PRINTS	Disease resistance protein signature	303	317	-	-
	Gabi1152g00002	1191	PRINTS	Disease resistance protein signature	227	242	-	-
	Gabi1152g00002	1191	PRINTS	Disease resistance protein signature	707	723	-	-
	Gabi1152g00002	1191	SUPERFAMILY	"Winged helix" DNA-binding domain	433	539	IPR036390	-
	Gabi1152g00002	1191	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	167	IPR035897	-
	Gabi1152g00002	1191	Gene3D	Ribonuclease Inhibitor	726	907	IPR032675	-
	Gabi1152g00002	1191	FunFam	Disease resistance protein (TIR-NBS-LRR class)	16	194	-	-
	Gabi1152g00002	1191	ProSiteProfiles	TIR domain profile.	17	192	IPR000157	GO:0007165
	Gabi1152g00002	1191	SUPERFAMILY	L domain-like	562	926	-	-
	Gabi1152g00002	1191	SMART	till_3	18	165	IPR000157	GO:0007165
	Gabi1152g00002	1191	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	19	728	IPR044974	GO:0006952
	Gabi1152g00002	1191	Pfam	NB-ARC domain	222	444	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1152g00002	Gabi-Chr1152	7203	12260	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1152g00002	19	841	WRKY Transcription Factor Family	AT4G12020	28.689	1.38e-73	267

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1152g00002	-		-	gmx:100814962	1288.48