Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1151g00004 ATGGAGCGTGTGGTGGCAACAGTGAGCGGGTACCATGGCTCGGAGCGGTTCAATCTCATCAAGCTGATTTCACATGTCGGGGCCAATTATGTTGGTGCTATGTCGAAATCAATCACGCACCTGGTGTGTTGGAAGTTTGAAGGAAGGAAATATGATATTGCCCGAAAGTTCAGAATACTTATAGTCAACCACCGATGGATTGAAGACTGCATAAAGGAACGAAGACGTGTCCCTGAGGATTCTTATCTCTTGCAAAGTGGACATGAAGTAGGGCCATTGTTACTGGAAGTTCCAGTCAGTGTTCAAACAAGTAGCTTGATAAAGAATAGAGTGGTTAGCAACAGGTTATATGATATTAGTTCTGAAAAGCAAAATACCGACTTCAGTCCCGGAGCTTCTGAAAATTCTGTTTCGAAAGATCTTTGTTTAATGACAAAGCATGAGGAGTCAAGTTCGTATTCATCTAGACTGTCAAGGAAAGGAAAAGAAAATAAATTCAATGGTAATGGAGCTGGTACTGTGGATGGACGTTCTCGCAAAGGAAGAAGGCTTGTGAAAAGTATTGTTGATAAAGAGGTGTTGGAGCCTTCAATTTTGGATTTAAGCCCTGAGAACCACCTTAGCAGAACGGATAGACTACATACAGATGGTGCAGCTACCTCAAGCCTTTCTGGTGGTGTCAATAATAAAAATATTCTAGAAAATAGAGAAGGCCCAGATGCTGGATTATATAATCAATGTAGAACTATCGATGGAGGTTCAGATGGCATTGAACAGATCAGAGATTCAACATTGTTTGTAGAAGATCCCCTTCCTATGGCACAAACATCAATAGATTTATGTTCCAGTGCTGAAGAGTTCACAGTTGGTGATCACGTTGATAATGTTACTAGTTCACCTACTACAAAAGAGTTGTCGTGTGTTATATGTTTCACGGATTTCAGCTCAACAAGGGGGATTCTACCGTGTGGGCATCGGTTTTGTTTTCCATGCATCCAGACTTGGGTTGATCATACGGCTTCAAAGGGAAAAATATCAACCTGCCCTTTGTGCAAGGCGAGTTTTATAATGATCAAGAAAATTGAGCATGCAGCCACAACTGATCAAAAAGTATTCTCCCAGACAATCCCATGTGAGAATTCAGCCTCAGATATTTTTATCCCCATGGATATAGAACTACCTGATAATAGCTTTGAGTCCTCACAGGCAGGTGCTTGTGTAGTTTGCCGTGGTCGGGAACCTGAGGATCTCCTTGAGAGTTGCGATGTTTGCCGGACTCGAAGAATCCATTCATATTGCATGGACCCTCCTTTACGACCCTGGACATGCACTCACTGCAAAGAACTTCGGATTCTTTATCGTAATCACTCATATTAA 1377 0.4198 MERVVATVSGYHGSERFNLIKLISHVGANYVGAMSKSITHLVCWKFEGRKYDIARKFRILIVNHRWIEDCIKERRRVPEDSYLLQSGHEVGPLLLEVPVSVQTSSLIKNRVVSNRLYDISSEKQNTDFSPGASENSVSKDLCLMTKHEESSSYSSRLSRKGKENKFNGNGAGTVDGRSRKGRRLVKSIVDKEVLEPSILDLSPENHLSRTDRLHTDGAATSSLSGGVNNKNILENREGPDAGLYNQCRTIDGGSDGIEQIRDSTLFVEDPLPMAQTSIDLCSSAEEFTVGDHVDNVTSSPTTKELSCVICFTDFSSTRGILPCGHRFCFPCIQTWVDHTASKGKISTCPLCKASFIMIKKIEHAATTDQKVFSQTIPCENSASDIFIPMDIELPDNSFESSQAGACVVCRGREPEDLLESCDVCRTRRIHSYCMDPPLRPWTCTHCKELRILYRNHSY 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1151g00004 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 457 IPR013083 -
Gabi1151g00004 458 ProSitePatterns Zinc finger RING-type signature. 323 332 IPR017907 -
Gabi1151g00004 458 Pfam Zinc finger, C3HC4 type (RING finger) 307 351 IPR018957 GO:0046872
Gabi1151g00004 458 SUPERFAMILY BRCT domain 2 85 IPR036420 -
Gabi1151g00004 458 Pfam twin BRCT domain 4 66 IPR001357 -
Gabi1151g00004 458 SMART BRCT_7 1 74 IPR001357 -
Gabi1151g00004 458 Gene3D BRCT domain 1 84 IPR036420 -
Gabi1151g00004 458 ProSiteProfiles Zinc finger RING-type profile. 307 352 IPR001841 -
Gabi1151g00004 458 MobiDBLite consensus disorder prediction 150 179 - -
Gabi1151g00004 458 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
Gabi1151g00004 458 SUPERFAMILY FYVE/PHD zinc finger 394 448 IPR011011 -
Gabi1151g00004 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 386 IPR013083 -
Gabi1151g00004 458 PANTHER F5A8.9 PROTEIN 132 455 - -
Gabi1151g00004 458 SMART ring_2 307 351 IPR001841 -
Gabi1151g00004 458 SUPERFAMILY RING/U-box 301 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1151g00004 Gabi-Chr1151 56065 65358 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1151g00004 38 90 Core DNA Replication Machinery Family AT4G02110 51.852 1.17e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1151g00004 - - gmx:100815034 665.225