Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1150g00006 ATGACATGGTGCAATATTGACTCAGATGAGGAGAGGGGCATTGAACATATCACGCCCACTATTATTCCCAGAACTAATAACACTGTTGTTACTGATGCAAAACCAACCGAAATTCGAACCATAACTTGTCCCTCATGTGGCCATAACATTGAATTCCAAGATCAGGCTGGAATCAATGACTTGCCGGGTTTACCAGCTGGGGTGAAGTTTGATCCGACTGACCAGGAGATACTAGAGCATTTGGAAGCAAAGGTGCTTTCTGATGTTCCCAATCTCCATCCCCTTATTGATGAGTTCATACCAACGCTTGAAGGGGAGAATGGGATCTGTTATACACACCCAGAAAAGCTACCAGGAGTAAGCAAAGATGGACAGATCCGCCACTTCTTTCATAGGCCTTCTAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGAAGAAGGAAGTGAGACAAGGTGGCACAAAACAGGAAAAACTAGACCAGTTTTTGTTGGTGGGGCCGTGAAGGGTTTCAAAAAGATACTAGTCCTCTACACCAACTATGGGAGGCAAAAGAAGCCTGAGAAGACTAATTGGGTGATGCATCAATACCATCTTGGCAGTAATGAAGAAGAGAAAGATGGAGAATTAGTGGCTTCAAAAGTCTTCTACCAAACACAACCTCGACAATGTGGTAATTCCATTATAAAGGATCCTTATGAGAAAAGAATAACTCACCACCGAAGTGTCCATGATGATAGTATAATGCCTAAAAATGCAGCTCTTGGGGATTACTATAATCCTCCTTTCATAAATTATGACCATGTGGGACATAATAGGGAAAGCTCACCTCAACTTATTCCAAACTTGGTTGTGCAAGGTGATAGCTCTTCTTTTATTCGATTAGCAATGGATGCAAACAAAGCCAGGCTTGACAGAAAATAG 939 0.4196 MTWCNIDSDEERGIEHITPTIIPRTNNTVVTDAKPTEIRTITCPSCGHNIEFQDQAGINDLPGLPAGVKFDPTDQEILEHLEAKVLSDVPNLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRPVFVGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVASKVFYQTQPRQCGNSIIKDPYEKRITHHRSVHDDSIMPKNAALGDYYNPPFINYDHVGHNRESSPQLIPNLVVQGDSSSFIRLAMDANKARLDRK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1150g00006 312 SUPERFAMILY NAC domain 59 223 IPR036093 GO:0003677|GO:0006355
Gabi1150g00006 312 FunFam NAC domain-containing protein 73 73 227 - -
Gabi1150g00006 312 ProSiteProfiles NAC domain profile. 64 223 IPR003441 GO:0003677|GO:0006355
Gabi1150g00006 312 Pfam No apical meristem (NAM) protein 65 204 IPR003441 GO:0003677|GO:0006355
Gabi1150g00006 312 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 35 239 IPR044799 GO:0003700
Gabi1150g00006 312 Gene3D NAC domain 73 227 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1150g00006 Gabi-Chr1150 160131 163340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1150g00006 1 233 NAC Transcription Factor Family AT4G28500 73.504 4.78e-123 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1150g00006 NAM 5.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1150g00006 - - vra:106766970 548.895