Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi114g00008 ATGGCCGCGAGTGGGAGATCTACTGGCACAGTGAAATGGTTCAACGCCCAGAAGGGTTTCGGATTCATAGCTCCCGACGATGGCGGCGAGGATCTCTTCGTGCATCAAACTTCCATTCGATCCGATGGCTACAGGACCCTATCGGAGGGCCAGCCGGTGGAGTTCCTCGTCGATTACGGCGACGCAGGGAAAACCAAGGCCGTCGACGTGACATCCATGGTTAGATCTCGTCGTTTTGGTGGTTTTCGCGGTGGAGGTGGGAGGGCTAGAGGAGGAGGTGGATACGCCGGGCGCTACGGCGGCGGAGAAGGCTACGGTGATGGTTACGGGTATGGTAGAGGCGGAGGGATCGGGCGGAGAGGAGGAGGAGGAGGTTACGGTGGTGGAGGTGGCAGATTTGGTGGTGGTGGTGGTGGTGGGGGAGGCCCTGAGTGTTATAATTGTGGAAGAATAGGTCATTTGGCGAGAGATTGTTATCAGGGACAGGGTGCTTTTGAAGGAGGGTATCGGAGAGGCCGTGGCGGCGGCAGTGGCGGCGGTGGAGGAGGACGAGGAGGAGGGTGTTATAACTGTGGTGAGGAAGGGCATTTTGCGAGGGAATGTCCGAATGCTGGAAAATGA 621 0.5813 MAASGRSTGTVKWFNAQKGFGFIAPDDGGEDLFVHQTSIRSDGYRTLSEGQPVEFLVDYGDAGKTKAVDVTSMVRSRRFGGFRGGGGRARGGGGYAGRYGGGEGYGDGYGYGRGGGIGRRGGGGGYGGGGGRFGGGGGGGGGPECYNCGRIGHLARDCYQGQGAFEGGYRRGRGGGSGGGGGGRGGGCYNCGEEGHFARECPNAGK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi114g00008 206 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Gabi114g00008 206 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Gabi114g00008 206 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Gabi114g00008 206 SMART csp_8 8 73 IPR011129 GO:0003676
Gabi114g00008 206 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Gabi114g00008 206 SUPERFAMILY Retrovirus zinc finger-like domains 135 204 IPR036875 GO:0003676|GO:0008270
Gabi114g00008 206 Gene3D - 183 206 - -
Gabi114g00008 206 SMART c2hcfinal6 144 160 IPR001878 GO:0003676|GO:0008270
Gabi114g00008 206 SMART c2hcfinal6 187 203 IPR001878 GO:0003676|GO:0008270
Gabi114g00008 206 Gene3D - 2 71 IPR012340 -
Gabi114g00008 206 SUPERFAMILY Nucleic acid-binding proteins 6 71 IPR012340 -
Gabi114g00008 206 Gene3D - 127 168 - -
Gabi114g00008 206 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Gabi114g00008 206 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Gabi114g00008 206 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Gabi114g00008 206 ProSiteProfiles Zinc finger CCHC-type profile. 188 203 IPR001878 GO:0003676|GO:0008270
Gabi114g00008 206 PANTHER COLD SHOCK DOMAIN PROTEIN 2 113 204 - -
Gabi114g00008 206 ProSiteProfiles Zinc finger CCHC-type profile. 145 158 IPR001878 GO:0003676|GO:0008270
Gabi114g00008 206 Pfam Zinc knuckle 187 203 IPR001878 GO:0003676|GO:0008270
Gabi114g00008 206 Pfam Zinc knuckle 144 158 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi114g00008 Gabi-Chr114 94466 95506 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gabi114g00008 CSD 4.2e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi114g00008 - K09250 vvi:100266087 171.014